rs265650225 SNP Detail

Summary

• ID
  rs265650225
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70704855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAATTATG ACATGTTCAC
  AATTGAGCTA TTACTTAATA AGGAGAATTA ATAAAATAAA ACTTAAGAGC ATAGTTTAAT
  CTCATAAACA AGATAATAAG CAAAACAAAA CATTTTTTCA TCCATGTAAG TTTAAAAGCA
  GGTAAAATTT AAAATTAAGA GAGACATAAG TTTTGAGGTA GCAAGATGGA AACTCTGGGG
  Y
  TTGGGGAATG TTCTGTCTCT CTGTATGGGA TGTGAAAGTT ACTATTGTGG AATTGGGATC
  TATGTTCTTC CTGTATATAT TGTATACTTC ATAATAACTT CACCTAAAGA AATATCTAAT
  ACCCAGTGCA TACATAAAAG AGGATACAAG GAATGAATCA TACGTCAAGG CCAGAAAGAC
  AATAAAGTAG GGGATCCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321815817	CHEV_6_70677865	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265650225					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70704855 () rs orientation: forward

Symbol	Name	Function Class
Gm30211	predicted gene, 30211	1342 bp upstream
Gm68839	predicted gene, 68839	905 bp upstream
Igk	immunoglobulin kappa chain complex	1117 bp downstream
Igkc	immunoglobulin kappa constant	1117 bp downstream
Rr158	regulatory region 158	1920 bp distal
Rr150202	regulatory region 150202	within coordinates
Rr399686	regulatory region 399686	1060 bp downstream
Tssr1880	transcription start site region 1880	1020 bp downstream
Tssr56957	transcription start site region 56957	1399 bp downstream
Tssr56958	transcription start site region 56958	1383 bp downstream
Tssr56959	transcription start site region 56959	1365 bp downstream
Tssr56960	transcription start site region 56960	1350 bp downstream
Tssr56961	transcription start site region 56961	1334 bp downstream
Tssr56962	transcription start site region 56962	1322 bp downstream
Tssr56963	transcription start site region 56963	1275 bp downstream
Tssr56964	transcription start site region 56964	1264 bp downstream
Tssr56965	transcription start site region 56965	1252 bp downstream
Tssr56966	transcription start site region 56966	1244 bp downstream
Tssr56967	transcription start site region 56967	1224 bp downstream
Tssr56968	transcription start site region 56968	1194 bp downstream
Tssr56969	transcription start site region 56969	1170 bp downstream
Tssr56970	transcription start site region 56970	1151 bp downstream
Tssr56971	transcription start site region 56971	1139 bp downstream
Tssr56972	transcription start site region 56972	1080 bp downstream
Tssr56973	transcription start site region 56973	1069 bp downstream
Tssr56974	transcription start site region 56974	1039 bp downstream
Tssr56975	transcription start site region 56975	1002 bp downstream
Tssr61321	transcription start site region 61321	1362 bp upstream
Tssr61322	transcription start site region 61322	1214 bp upstream
Tssr61323	transcription start site region 61323	1133 bp upstream
Tssr61324	transcription start site region 61324	1056 bp upstream
Tssr61325	transcription start site region 61325	1023 bp upstream
Tssr61326	transcription start site region 61326	1010 bp upstream
Tssr61327	transcription start site region 61327	984 bp upstream
Tssr61328	transcription start site region 61328	906 bp upstream