rs265653860 SNP Detail

Summary

• ID
  rs265653860
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:38527688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGA GATTAAGAAA TCAACTACGG
  W
  TGGAAGGTCG CAGTCAGCAG GGCGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321787287	CHEV_6_38500753	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265653860					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:38527688 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17313	CpG island 17313	within coordinates
Gm56952	predicted gene, 56952	10 bp upstream
Gm67915	predicted gene, 67915	within coordinates
Luc7l2	LUC7-like 2 (S. cerevisiae)	581 bp upstream
Rr399618	regulatory region 399618	1158 bp upstream
Rr628836	regulatory region 628836	within coordinates
Rr628837	regulatory region 628837	21 bp proximal
Rr628838	regulatory region 628838	148 bp proximal
Rr628839	regulatory region 628839	490 bp proximal
Rr628840	regulatory region 628840	1061 bp proximal
Tssr55654	transcription start site region 55654	20 bp upstream
Tssr55655	transcription start site region 55655	679 bp upstream
Tssr55656	transcription start site region 55656	750 bp upstream
Tssr55657	transcription start site region 55657	784 bp upstream
Tssr55658	transcription start site region 55658	803 bp upstream
Tssr55659	transcription start site region 55659	1033 bp upstream
Tssr60415	transcription start site region 60415	459 bp downstream
Tssr60416	transcription start site region 60416	1239 bp downstream