rs265654700 SNP Detail

Summary

• ID
  rs265654700
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116550718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTATAATAT AGCCCTAGAT
  GGCCTTAAAC TTCAGGTTGA CCTCTTACTA GAATTTATGT GCCTGTGCCA TCATGCCTCA
  CCTCCAACCT ATTTTATTTT AGAAATGGTG TCAGATAGCT GAGGATAAAC TTGAACTCCT
  GATCAACTAA CTGTCTGCAC TTTACATTAG TGCACCATGT CTGCTTTATT TGGTTTTGGG
  K
  ATCGACCCAG TCTTTTCTGC TAGGCAGGCA CTCTGCAAAC TGAGCTATAG CTCTTTCTCA
  TTGAGTTATT TAATGTAGTG AGTGGTCTCA CTAATGGTAG GTTGGTATAA CTTGTAGCAA
  GCCTATTTCC TTAGGAATTC TAACAATGAA GACTTATAAT GCGTTTTTCT CAATCCTTCA
  ATTTCTTCCA CCCAGGGGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321277802	CHEV_4_116366126	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265654700					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116550718 () rs orientation: forward

Symbol	Name	Function Class
Prdx1	peroxiredoxin 1	within coordinates
Tssr38559	transcription start site region 38559	1622 bp downstream
Tssr38560	transcription start site region 38560	1584 bp downstream
Tssr38561	transcription start site region 38561	198 bp upstream
Tssr38562	transcription start site region 38562	296 bp upstream
Tssr38563	transcription start site region 38563	426 bp upstream
Tssr38564	transcription start site region 38564	559 bp upstream
Tssr38565	transcription start site region 38565	590 bp upstream