rs265657613 SNP Detail

Summary

• ID
  rs265657613
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:44508955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTCTTTTC GTTGGATTTT
  CCCTTTCTTT TTTTTTCCCC TCGCCCCCCT CCTTGTTATC GCTCAGTTTT GAGCGAAGGT
  TTACATTTTT AAAAATTTTG CTTTTCAGCC CGCCTTGATG TAGCGCGAGT CTCATCGACT
  CAAAAAAAAA AAAAAAAATC TGTGGTTGGC GTTTTTTTTT TTTTTTCCTT TTTTTTTTTT
  Y
  CAAATATTTT CAAAGGGGAG GAGATTTTTC CACAAGAAAA GGTTGTTTTC ATGTTTGGGA
  TCCAGGAAAG CATCCAACGG AGTGGAAGCA GTATGAAGGA AGAGCCGCTG GGCAGCGGCA
  TGAACGCGGT GCGGACGTGG ATGCAGGGCG CCGGGGTGCT GGACGCCAAC ACAGCGGCGC
  AGAGGTGGGT ACCGCTGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383201275	MGP_WTSI_11_44431630	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265657613					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383201275	MGP_WTSI_11_44431630	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:44508955 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2762	CpG island 2762	825 bp distal
Cpgi2763	CpG island 2763	17 bp proximal
Cpgi2764	CpG island 2764	1644 bp proximal
D11Mit175	DNA segment, Chr 11, Massachusetts Institute of Technology 175	1353 bp proximal
Ebf1	early B cell factor 1	within coordinates
Gm37695	predicted gene, 37695	1112 bp upstream
Rr369170	regulatory region 369170	815 bp downstream
Rr445653	regulatory region 445653	801 bp distal
Rr445654	regulatory region 445654	within coordinates
Tssr101029	transcription start site region 101029	826 bp downstream
Tssr101030	transcription start site region 101030	792 bp downstream
Tssr101031	transcription start site region 101031	767 bp downstream
Tssr101032	transcription start site region 101032	731 bp downstream
Tssr101033	transcription start site region 101033	615 bp downstream
Tssr101034	transcription start site region 101034	585 bp downstream
Tssr101035	transcription start site region 101035	570 bp downstream
Tssr101036	transcription start site region 101036	498 bp downstream
Tssr101037	transcription start site region 101037	468 bp downstream
Tssr101038	transcription start site region 101038	425 bp downstream
Tssr101039	transcription start site region 101039	241 bp downstream
Tssr101040	transcription start site region 101040	193 bp downstream
Tssr101041	transcription start site region 101041	within coordinates
Tssr101042	transcription start site region 101042	57 bp upstream
Tssr101043	transcription start site region 101043	80 bp upstream
Tssr101044	transcription start site region 101044	450 bp upstream
Tssr107570	transcription start site region 107570	59 bp upstream