rs265662720 SNP Detail

Summary

• ID
  rs265662720
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:87053528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGGTGTC TCTGTCCCCA
  GACATACAGT GTGGACAGAC AGGTTCCAGA CAGTGCAAGC ACGGCCACCG CCTACCTGTG
  TGGGGTCAAG ACCAACTACA AGACCATCGG CGTGAGCGCA GCCGCGAGAT TCGACCAGTG
  CAACACCACA TTTGGCAATG AGGTCTTCTC AGTGATGTAC CGTGCCAAGA AAGCAGGTGA
  R
  TTGGAGCCAG GCTCAGCTAT GGGGGGCAAG CCTAGGGGAC TGGATGTCTC ACCCTGACCT
  TTGCCGTCTT CAGGAAAATC CGTAGGTGTG GTGACCACCA CCAGAGTGCA GCACGCCTCT
  CCCTCGGGCA CATATGTTCA CACAGTGAAC CGCAATTGGT ATGGGGATGC TGACATGCCT
  GCCTCTGCGC TGCGGGAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350380297	MGP_WTSI_1_89022381	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265662720					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350380297	MGP_WTSI_1_89022381	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87053528 () rs orientation: forward

Symbol	Name	Function Class
Akp3	alkaline phosphatase 3, intestine, not Mn requiring	within coordinates
Cpgi518	CpG island 518	1304 bp proximal
Rr17963	regulatory region 17963	1073 bp proximal
Tssr145	transcription start site region 145	538 bp upstream
Tssr146	transcription start site region 146	1782 bp upstream
Tssr7781	transcription start site region 7781	846 bp downstream
Tssr7782	transcription start site region 7782	403 bp downstream
Tssr7783	transcription start site region 7783	110 bp downstream
Tssr7784	transcription start site region 7784	125 bp upstream
Tssr7785	transcription start site region 7785	161 bp upstream
Tssr7786	transcription start site region 7786	191 bp upstream
Tssr7787	transcription start site region 7787	517 bp upstream
Tssr7788	transcription start site region 7788	919 bp upstream
Tssr7789	transcription start site region 7789	949 bp upstream
Tssr7790	transcription start site region 7790	1003 bp upstream
Tssr7791	transcription start site region 7791	1127 bp upstream
Tssr7792	transcription start site region 7792	1155 bp upstream
Tssr7793	transcription start site region 7793	1168 bp upstream
Tssr7794	transcription start site region 7794	1185 bp upstream
Tssr7795	transcription start site region 7795	1211 bp upstream
Tssr7796	transcription start site region 7796	1234 bp upstream
Tssr7797	transcription start site region 7797	1251 bp upstream
Tssr7798	transcription start site region 7798	1288 bp upstream
Tssr7799	transcription start site region 7799	1524 bp upstream
Tssr7800	transcription start site region 7800	1543 bp upstream
Tssr7801	transcription start site region 7801	1602 bp upstream
Tssr7802	transcription start site region 7802	1729 bp upstream
Tssr7803	transcription start site region 7803	1790 bp upstream
Tssr7804	transcription start site region 7804	1814 bp upstream
Tssr7805	transcription start site region 7805	1888 bp upstream
Tssr7806	transcription start site region 7806	1902 bp upstream
Tssr7807	transcription start site region 7807	1922 bp upstream
Tssr12838	transcription start site region 12838	76 bp upstream
Tssr12839	transcription start site region 12839	66 bp upstream
Tssr12840	transcription start site region 12840	57 bp upstream
Tssr12841	transcription start site region 12841	992 bp downstream
Tssr12842	transcription start site region 12842	1318 bp downstream
Tssr12843	transcription start site region 12843	1580 bp downstream
Tssr12844	transcription start site region 12844	1771 bp downstream
Tssr12845	transcription start site region 12845	1942 bp downstream