rs265680054 SNP Detail

Summary

• ID
  rs265680054
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123259017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATTTATGTt aagataaatt aaaattttcc
  cggcccaaga tagttttggc tcatgtttca tcacagcaat agaaaAGTga aaagatccaa
  aagttatcta tcatgatcac ttcagtttca tcctagagat ggagggatgt cacaatatat
  R
  caagtcaagg agtgtaatga accatgcaaa taaacccaag gacagaaacc acatggtctt
  tgtgatttct ttgtgtgccc tttgatggaa ttcagaatct tttaatatga agctcctaga
  gattctaggg atacagaaga gatagcacaa                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321935854	CHEV_6_123232076	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265680054					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123259017 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	within coordinates
Tssr58808	transcription start site region 58808	672 bp upstream
Tssr58809	transcription start site region 58809	1334 bp upstream
Tssr58810	transcription start site region 58810	1360 bp upstream
Tssr58811	transcription start site region 58811	1396 bp upstream
Tssr63019	transcription start site region 63019	486 bp upstream
Tssr63020	transcription start site region 63020	435 bp downstream
Tssr63021	transcription start site region 63021	521 bp downstream
Tssr63022	transcription start site region 63022	556 bp downstream
Tssr63023	transcription start site region 63023	584 bp downstream
Tssr63024	transcription start site region 63024	687 bp downstream
Tssr63025	transcription start site region 63025	740 bp downstream
Tssr63026	transcription start site region 63026	751 bp downstream
Tssr63027	transcription start site region 63027	800 bp downstream
Tssr63028	transcription start site region 63028	813 bp downstream
Tssr63029	transcription start site region 63029	844 bp downstream
Tssr63030	transcription start site region 63030	874 bp downstream
Tssr63031	transcription start site region 63031	931 bp downstream
Tssr63032	transcription start site region 63032	955 bp downstream
Tssr63033	transcription start site region 63033	980 bp downstream
Tssr63034	transcription start site region 63034	999 bp downstream
Tssr63035	transcription start site region 63035	1020 bp downstream
Tssr63036	transcription start site region 63036	1074 bp downstream
Tssr63037	transcription start site region 63037	1104 bp downstream
Tssr63038	transcription start site region 63038	1141 bp downstream
Tssr63039	transcription start site region 63039	1200 bp downstream
Tssr63040	transcription start site region 63040	1258 bp downstream
Tssr63041	transcription start site region 63041	1307 bp downstream
Tssr63042	transcription start site region 63042	1332 bp downstream
Tssr63043	transcription start site region 63043	1342 bp downstream
Tssr63044	transcription start site region 63044	1364 bp downstream
Tssr63045	transcription start site region 63045	1455 bp downstream
Tssr63046	transcription start site region 63046	1474 bp downstream
Tssr63047	transcription start site region 63047	1497 bp downstream
Tssr63048	transcription start site region 63048	1525 bp downstream
Tssr63049	transcription start site region 63049	1540 bp downstream
Tssr63050	transcription start site region 63050	1564 bp downstream
Tssr63051	transcription start site region 63051	1616 bp downstream