rs265688406 SNP Detail

Summary

• ID
  rs265688406
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:99774986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCCCGCT ACAGACACGC
  ACAAGCAGAC ACGCACACAT GCACCTTTGC CCTGTGTGCT TAATGTACTT TAAGGATAGC
  TCAGAGGGTG GGGCCTCTGG GACGGGGAAG GTGGGAGTTG GGTTTCTATT TGGGGTGGAG
  GGTGACTGTA TATGATGTCT GGGAAGGAAA TGATAAGGCT AGGTTGTGGG GGCGGGGGGG
  R
  GACTTGGATT TTCTGGACTG TGCAGACAGG AATGAGGTTC CTTTAGAAGG CAGTGATCCA
  GGCAGCCTGC TCCCCTCAAG TCTTCTATTT TACAGTGCCC CTAACCCCTG AGAAGTGGAC
  ACAGAGAATC TTTTAGTCAG GGGCTTTGTG GTTTGTTCAA TCCCGTATCC ATAGCAACTA
  GTCAACTGGC TGTGTCTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404170241	MGP_WTSI_X_97926719	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265688406					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404170241	MGP_WTSI_X_97926719	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:99774986 () rs orientation: forward

Symbol	Name	Function Class
Gdpd2	glycerophosphodiester phosphodiesterase domain containing 2	within coordinates
Rr692772	regulatory region 692772	1184 bp distal
Rr692773	regulatory region 692773	1281 bp distal
Rr692774	regulatory region 692774	600 bp distal
Tssr161618	transcription start site region 161618	1557 bp downstream
Tssr161619	transcription start site region 161619	1534 bp downstream
Tssr161620	transcription start site region 161620	1417 bp downstream
Tssr161621	transcription start site region 161621	1386 bp downstream
Tssr161622	transcription start site region 161622	1258 bp downstream
Tssr161623	transcription start site region 161623	1239 bp downstream
Tssr161624	transcription start site region 161624	1213 bp downstream
Tssr161625	transcription start site region 161625	1191 bp downstream