rs265691315 SNP Detail

Summary

• ID
  rs265691315
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126618390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGTGAGG GTGAGGGGTT
  TGGAGGTATC ATGGCCCAGG TCAGCAGGAG CCAGCCCAGC AGGGATCAGG TGAGAGTCCA
  GAGGAGGAAG GTCAGCCCAA TGGGGTTGAG AAAGGAAGGA GAATTGGGGA CGCAGGAGGA
  AGAGGGTACA GGTCAGTAAG ATTATATGAC ACATCTGTTT CCCTCCCGCT TGAAGGGGTC
  R
  GGCAGGAGTG CCTTGGAAGG TTAGGTCCTG GGGAGAGACA AGCAAAGGGC CAGCAATTGG
  AAAAGTGGGA TCCATGCAGA GAGGTGAGGG AAGGTGTCAT TACTGGGGCT CTGGGCTGAC
  ACTGGCACGA AGCTGAGAGC CACAGTACAC TTGGGCCAGG GTCCCTTGGG GCTCACCATG
  ACGGCATAAG CGAAGGCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373079203	MGP_WTSI_7_134162732	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265691315					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373079203	MGP_WTSI_7_134162732	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126618390 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19725	CpG island 19725			1698 bp distal
Cpgi19726	CpG island 19726			1675 bp proximal
Gm42742	predicted gene 42742			Intron
				Noncoding-Transcript-Variant
Gm53372	predicted gene, 53372			1999 bp upstream
Pagr1a	PAXIP1 associated glutamate rich protein 1A			1866 bp upstream
Prrt2	proline-rich transmembrane protein 2			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr400637	regulatory region 400637			1655 bp downstream
Rr655669	regulatory region 655669			1376 bp distal
Rr655670	regulatory region 655670			1139 bp proximal
Rr655671	regulatory region 655671			1909 bp proximal
Tssr74882	transcription start site region 74882			1956 bp upstream
Tssr74883	transcription start site region 74883			1926 bp upstream
Tssr74884	transcription start site region 74884			1875 bp upstream
Tssr74885	transcription start site region 74885			1826 bp upstream
Tssr74886	transcription start site region 74886			695 bp upstream
Tssr74887	transcription start site region 74887			641 bp upstream
Tssr74888	transcription start site region 74888			622 bp upstream
Tssr74889	transcription start site region 74889			292 bp upstream
Tssr74890	transcription start site region 74890			277 bp downstream
Tssr74891	transcription start site region 74891			459 bp downstream
Tssr74892	transcription start site region 74892			571 bp downstream
Tssr74893	transcription start site region 74893			666 bp downstream
Tssr74894	transcription start site region 74894			864 bp downstream
Tssr74895	transcription start site region 74895			909 bp downstream
Tssr74896	transcription start site region 74896			1090 bp downstream
Tssr74897	transcription start site region 74897			1103 bp downstream
Tssr74898	transcription start site region 74898			1828 bp downstream
Tssr74899	transcription start site region 74899			1859 bp downstream
Tssr74900	transcription start site region 74900			1923 bp downstream
Tssr74901	transcription start site region 74901			1948 bp downstream
Tssr74902	transcription start site region 74902			1987 bp downstream