rs265695981 SNP Detail

Summary

• ID
  rs265695981
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70704306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGCAGTCC TTTCTAAGGT
  TCACGAGTAC TATTCATGGC TTATTTCTCT GGGCCATGGT AGGTTTGAGG AGGCATACTT
  CCTAGTTTTC TTCCCCTAAG TCGTCAAAGT CCTGAAGGGG GACAGTCTTT ACAAGCACAT
  GTTCTGTAAT CTGATTCAAC CTACCCAGTA AACTTGGCGA AGCAAAGTAG AATCATTATC
  M
  CAGGAAGCAA AGGCAACCTA AATGTGCAAG CAATAGGAAA ATGTGGAAGC CCATCATAGT
  ACTTGGACTT CATCTGCTTT TGTGCCTTCA CTAAGTTTTT AAACATGAGC TGGCTCCTAT
  CTGCCATTGG CAAGGCTGGG CACTACCCAC AACCTACTTC AAGGACCTCT ATACCGTGAG
  ATTACACACA TACATCAAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368707623	MGP_WTSI_6_70677316	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	C	C	A	A	A	A	A	C	A	A	A	A	C	A	A	C	C	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265695981					SNP	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	C	C	A	A	A	A	A	C	A	A	A	A	C	A	A	C	C	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368707623	MGP_WTSI_6_70677316	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70704306 () rs orientation: forward

Symbol	Name	Function Class
Gm30211	predicted gene, 30211	1891 bp upstream
Gm68839	predicted gene, 68839	356 bp upstream
Igk	immunoglobulin kappa chain complex	568 bp downstream
Igkc	immunoglobulin kappa constant	568 bp downstream
Rr158	regulatory region 158	1371 bp distal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	1887 bp downstream
Rr399685	regulatory region 399685	1475 bp downstream
Rr399686	regulatory region 399686	511 bp downstream
Tssr1880	transcription start site region 1880	471 bp downstream
Tssr56956	transcription start site region 56956	1489 bp downstream
Tssr56957	transcription start site region 56957	850 bp downstream
Tssr56958	transcription start site region 56958	834 bp downstream
Tssr56959	transcription start site region 56959	816 bp downstream
Tssr56960	transcription start site region 56960	801 bp downstream
Tssr56961	transcription start site region 56961	785 bp downstream
Tssr56962	transcription start site region 56962	773 bp downstream
Tssr56963	transcription start site region 56963	726 bp downstream
Tssr56964	transcription start site region 56964	715 bp downstream
Tssr56965	transcription start site region 56965	703 bp downstream
Tssr56966	transcription start site region 56966	695 bp downstream
Tssr56967	transcription start site region 56967	675 bp downstream
Tssr56968	transcription start site region 56968	645 bp downstream
Tssr56969	transcription start site region 56969	621 bp downstream
Tssr56970	transcription start site region 56970	602 bp downstream
Tssr56971	transcription start site region 56971	590 bp downstream
Tssr56972	transcription start site region 56972	531 bp downstream
Tssr56973	transcription start site region 56973	520 bp downstream
Tssr56974	transcription start site region 56974	490 bp downstream
Tssr56975	transcription start site region 56975	453 bp downstream
Tssr61321	transcription start site region 61321	813 bp upstream
Tssr61322	transcription start site region 61322	665 bp upstream
Tssr61323	transcription start site region 61323	584 bp upstream
Tssr61324	transcription start site region 61324	507 bp upstream
Tssr61325	transcription start site region 61325	474 bp upstream
Tssr61326	transcription start site region 61326	461 bp upstream
Tssr61327	transcription start site region 61327	435 bp upstream
Tssr61328	transcription start site region 61328	357 bp upstream