rs265701092 SNP Detail

Summary

• ID
  rs265701092
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:52648641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGAAAGT TGTAGAAGAT
  TAAGTTCAAT TCAAAGTTTT GTATATCTTT AGGTTTTTTG TTTTTGTTTT TGTTTTTGTT
  TTGATTTTTG TAACTTACAG AGGAAGAAAG GGCATGGAGT TAGTTTGAGA TGAAGGTGGA
  AATGGTCAGG GCACACTTTG GGTAAGTATA AAGCATAATA AGAATATATT TTATAGAAAA
  C
  CTTTTCAATA AAAAGACCAG CATGTAATAT CTTAATGCTT TATCTGATTG TTATTTATTT
  TTTATAGGAA ACATGGACAA GGCATTGTAT AAACCAACAT TATAGGTGAA CAGTTTTGAT
  TCATCTTGGC TTATAATCAA ATTTTTAAAT AGAAAATATT CTTTTTTTTT ACTGTTATAA
  TAACTTTAAT CTTGCATTTT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374682806	MGP_WTSI_8_53280960	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265701092					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374682806	MGP_WTSI_8_53280960	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:52648641 () rs orientation: forward

Symbol	Name	Function Class
Gm9892	predicted gene 9892	459 bp downstream
Gm64848	predicted gene, 64848	1394 bp downstream
Rr663484	regulatory region 663484	1451 bp proximal
Tssr81291	transcription start site region 81291	1260 bp downstream
Tssr81292	transcription start site region 81292	1433 bp downstream
Tssr81293	transcription start site region 81293	1528 bp downstream
Tssr81294	transcription start site region 81294	1542 bp downstream