rs265704366 SNP Detail

Summary

• ID
  rs265704366
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81004871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCCACCC AACCCCCAAA
  TTTTCGAAGC TTGCACTGGG GCCACGCTCA CTTCTAGCCC CGCTCTGGGT TTTTAAGCGA
  GAACGGCACC GCCCCTTGCT TCCGTTTCAT TGGGAGGACT GGACCGCGCC CACGTGGGGA
  GGGTGGTCTT AAAGGTGTAT GTGCTTCCTG CTCTGGTGCA TTTTATGGCT CATGTTTACG
  R
  TTGCATTTTG ATGAAGAGAA GGGTTGGGGA TGAACAGAAT GCGGCCGGGC AGGTGTCCCT
  GTTCCCTTCG AGCGGCAGCT GGCAGGTGTA GGGCTCGCAT GGCCCTGTAG TGATGGGGTG
  TGAGCCTAGT CGGCCCTGTG CAGTGCACAT CTGGGTCGTC TTGCGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss381031920	MGP_WTSI_10_80631782	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs265704366					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381031920	MGP_WTSI_10_80631782	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81004871 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1946	CpG island 1946	994 bp distal
Cpgi1947	CpG island 1947	within coordinates
Pias4	protein inhibitor of activated STAT 4	1317 bp upstream
Rr402075	regulatory region 402075	995 bp downstream
Rr402076	regulatory region 402076	within coordinates
Rr402077	regulatory region 402077	446 bp upstream
Rr435533	regulatory region 435533	1125 bp distal
Rr435534	regulatory region 435534	624 bp distal
Rr435535	regulatory region 435535	283 bp distal
Rr435536	regulatory region 435536	377 bp proximal
Tssr94693	transcription start site region 94693	997 bp downstream
Tssr98565	transcription start site region 98565	1283 bp upstream
Tssr98566	transcription start site region 98566	1256 bp upstream
Tssr98567	transcription start site region 98567	1188 bp upstream
Tssr98568	transcription start site region 98568	1132 bp upstream
Tssr98569	transcription start site region 98569	153 bp upstream