rs265715950 SNP Detail

Summary

• ID
  rs265715950
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47036003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAGCTGA CTGGTGCAGA
  TCTCTATTCT CTCTGCTCTG ACGCCATGAT GACTGCCCTC AAACGCAGGG TTCGAGACCT
  AGAGGAAGGT GAGCCCACCT GCCAGCCCTG GATGGGAACC ATAAAGCTAG GGAGACAGTC
  CTGGCCCTGA ATTCCAGAGG AATGGCTGAG CAGGGGGTGT CGTCGTCGTC GTCCCGTCCC
  G
  TCCCCCCCCC CCCCCCCCGG GAGTGGCTCT CCTACCTAGG CATAGACTGC AGCCTCTGTA
  CTTCAGCTAG GGCTGGGGCT CTGGCCTTAG TCTTCCTTTC CACCCCTTAG GGCTAGAGCT
  GCGGAGCTCA GCACTGCTGC TCACCATGGA GGACCTGTTG CAGGCTGCAG CCCGGCTGCA
  GCCCTCAGTC AGTGAGCAGG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss398327220	MGP_WTSI_17_46862026	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs265715950					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398327220	MGP_WTSI_17_46862026	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47036003 () rs orientation: forward

Symbol	Name	Function Class
Gnmt	glycine N-methyltransferase	587 bp downstream
Pex6	peroxisomal biogenesis factor 6	within coordinates
Rr331605	regulatory region 331605	within coordinates
Tssr148377	transcription start site region 148377	1237 bp downstream
Tssr148378	transcription start site region 148378	1250 bp downstream
Tssr148379	transcription start site region 148379	1267 bp downstream
Tssr148380	transcription start site region 148380	1632 bp downstream