rs265720916 SNP Detail

Summary

• ID
  rs265720916
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80158160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGGTCAC CTGGGGGGCC
  TGGGGCCGTG CTGTCATGTC CTCGGCCGTC CCATACAGCA GCAGGGTGTA GTAGTACAGA
  GTTCCTGGGC GGGGGTCGCA GTGGGCACCA AGGGGGACAC CTGTCATTGG CCTGCCGGGC
  TCTGTAGCCA GCCTCACTGT CTCCCAAGCA GGGCCCCGTA GCAACTGTAC CTACTATGTG
  Y
  TAGTGGCCAC ACCACCTCAC ATCTCCCAGG TAGGTGGCAC CTGGTTTGCA CTGGTCAGAC
  CATCCCCACA GTTGCTACAC ATCTACTGTG TGCCAGTGGC CAGACCCACT TCTCTTAGGT
  GACTGCACCT ACTGTGTGCC ACTGTGCTCA GAGTGCCCCG CTCCTTTAAG TTACCTTAAA
  CCTAATTTAC AAACCCTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381017659	MGP_WTSI_10_79785071	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265720916					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381017659	MGP_WTSI_10_79785071	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80158160 () rs orientation: forward

Symbol	Name	Function Class
2310011J03Rik	RIKEN cDNA 2310011J03 gene	1789 bp upstream
Cpgi1870	CpG island 1870	1505 bp distal
Cpgi1871	CpG island 1871	454 bp proximal
Pcsk4	proprotein convertase subtilisin/kexin type 4	within coordinates
Rr402045	regulatory region 402045	1550 bp downstream
Tssr94549	transcription start site region 94549	1177 bp upstream
Tssr98420	transcription start site region 98420	1773 bp upstream
Tssr98421	transcription start site region 98421	1766 bp upstream
Tssr98422	transcription start site region 98422	710 bp downstream
Tssr98423	transcription start site region 98423	738 bp downstream
Tssr98424	transcription start site region 98424	795 bp downstream
Tssr98425	transcription start site region 98425	1053 bp downstream
Tssr98426	transcription start site region 98426	1430 bp downstream