rs265736371 SNP Detail

Summary

• ID
  rs265736371
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54799985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCCTTCC CTCAAGTCTC
  TTCATCTTAG TTCTGAGCTA TGTGTGGCTG CTCTGGACTC ACTCAAGTAC ACTCCTCCCA
  GGTATGTTCG ACCAGGTGGG GGCTTTGTGC CTAATTTCCA GCTCTTTGAG AAAGGAGATG
  TGAACGGGGA GAAAGAGCAG AAATTCTACA CTTTCCTGAA GGTGAGAGTG GGTAATATGG
  R
  GGAAGCTCCC CTTAGCGGCT TAGGCCCTGG CCCACAGGAA TGTCTTGGCA TTGGTCTAGT
  AGACCCATGA GAGGGCTTGG CAGACCCAGT CCTATCACCC TACTGCAGAC GTAAGACAGG
  GTCCACAGCC TTCCAGTCAG CATAGAGATG GACGGACAGT CAAGTGTTCT TGTTCCCGAA
  CTGGGCCCTT CCCTCAGTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383428906	MGP_WTSI_11_54722661	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265736371					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383428906	MGP_WTSI_11_54722661	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54799985 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	within coordinates
Tnip1	TNFAIP3 interacting protein 1	1626 bp downstream
Tssr3502	transcription start site region 3502	482 bp downstream
Tssr3503	transcription start site region 3503	956 bp upstream
Tssr101557	transcription start site region 101557	1999 bp downstream
Tssr101558	transcription start site region 101558	1982 bp downstream
Tssr101559	transcription start site region 101559	1959 bp downstream
Tssr101560	transcription start site region 101560	1913 bp downstream
Tssr101561	transcription start site region 101561	602 bp downstream
Tssr101562	transcription start site region 101562	555 bp downstream
Tssr101563	transcription start site region 101563	543 bp downstream
Tssr101564	transcription start site region 101564	522 bp downstream
Tssr101565	transcription start site region 101565	92 bp downstream
Tssr101566	transcription start site region 101566	46 bp downstream
Tssr101567	transcription start site region 101567	304 bp upstream
Tssr101568	transcription start site region 101568	380 bp upstream
Tssr101569	transcription start site region 101569	463 bp upstream
Tssr101570	transcription start site region 101570	485 bp upstream
Tssr101571	transcription start site region 101571	539 bp upstream
Tssr101572	transcription start site region 101572	634 bp upstream
Tssr101573	transcription start site region 101573	671 bp upstream
Tssr101574	transcription start site region 101574	685 bp upstream
Tssr101575	transcription start site region 101575	733 bp upstream
Tssr101576	transcription start site region 101576	747 bp upstream
Tssr101577	transcription start site region 101577	776 bp upstream
Tssr101578	transcription start site region 101578	859 bp upstream
Tssr108006	transcription start site region 108006	1874 bp upstream
Tssr108007	transcription start site region 108007	585 bp upstream
Tssr108008	transcription start site region 108008	524 bp upstream
Tssr108009	transcription start site region 108009	508 bp upstream
Tssr108010	transcription start site region 108010	88 bp upstream
Tssr108011	transcription start site region 108011	498 bp downstream
Tssr108012	transcription start site region 108012	532 bp downstream
Tssr108013	transcription start site region 108013	626 bp downstream
Tssr108014	transcription start site region 108014	633 bp downstream
Tssr108015	transcription start site region 108015	716 bp downstream
Tssr108016	transcription start site region 108016	768 bp downstream
Tssr108017	transcription start site region 108017	819 bp downstream
Tssr108018	transcription start site region 108018	834 bp downstream
Tssr108019	transcription start site region 108019	870 bp downstream
Tssr108020	transcription start site region 108020	926 bp downstream
Tssr108021	transcription start site region 108021	946 bp downstream
Tssr108022	transcription start site region 108022	957 bp downstream
Tssr108023	transcription start site region 108023	1210 bp downstream