rs265745101 SNP Detail

Summary

• ID
  rs265745101
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:57009819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGAGATTTG GAAAGGCTAC CCTCCATCCC
  AGGATCACAA TTATTATTTG GGAGCATTCT TATCTTCATC GTATCCTGGA TGTGGTTGTT
  GTTTTTTAAG CCATTAAGCG TACAACATAA GAGAAAGAAA TCTTGATTCT TAGGTACAGG
  R
  GCAGGCTTCA TTAATCCTAA TTTCTAAATC TGGAAAGTTT TTCTCGAGGT CCCTAGGCGA
  GCAGTGCTCC ATACTCTTCA ATTTTGGAGG AGTGACCCGG AAGAAGGGAA AACACCTGAT
  GAAACGGCGC CCACATTGTC ACTGAAACCC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319733552	CHEV_1_57027504	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265745101					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:57009819 () rs orientation: forward

Symbol	Name	Function Class
9130024F11Rik	RIKEN cDNA 9130024F11 gene	809 bp upstream
Cpgi267	CpG island 267	659 bp distal
Cpgi268	CpG island 268	169 bp proximal
Cpgi269	CpG island 269	802 bp proximal
Rr411276	regulatory region 411276	298 bp distal
Rr411277	regulatory region 411277	32 bp proximal
Rr411278	regulatory region 411278	302 bp proximal
Rr411279	regulatory region 411279	831 bp proximal
Rr411280	regulatory region 411280	1188 bp proximal
Rr411281	regulatory region 411281	1832 bp proximal
Satb2	special AT-rich sequence binding protein 2	within coordinates
Tssr6736	transcription start site region 6736	791 bp upstream
Tssr6737	transcription start site region 6737	1373 bp upstream
Tssr6738	transcription start site region 6738	1520 bp upstream
Tssr6739	transcription start site region 6739	1895 bp upstream
Tssr11745	transcription start site region 11745	810 bp upstream
Tssr11746	transcription start site region 11746	785 bp upstream
Tssr11747	transcription start site region 11747	607 bp downstream
Tssr11748	transcription start site region 11748	621 bp downstream
Tssr11749	transcription start site region 11749	653 bp downstream
Tssr11750	transcription start site region 11750	678 bp downstream
Tssr11751	transcription start site region 11751	1034 bp downstream
Tssr11752	transcription start site region 11752	1052 bp downstream
Tssr11753	transcription start site region 11753	1090 bp downstream
Tssr11754	transcription start site region 11754	1102 bp downstream
Tssr11755	transcription start site region 11755	1523 bp downstream
Tssr11756	transcription start site region 11756	1572 bp downstream
Tssr11757	transcription start site region 11757	1777 bp downstream