rs265745996 SNP Detail

Summary

• ID
  rs265745996
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:76301495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGTCACCA TCCTTAATAA
  GTCGATTAAA CAAGTAATGG TAAGATATAG AAAAAGGAGA TTTATTCAAT ACGGCCACAT
  TGGGAAGAGG GACAAAGAGA AGTCTTATCT TCTGAGTTCT AATATGAAAC TGAGGTTTAA
  GTAAAGAGTC AGACTTGATA TAGAGTTGAA CAGTGAAGGT CGAGGTGTGG ACCTGTCCAT
  Y
  ACTGTCTTGG CTTCAGTCCT GCAAGGTGAT CTCTGAAATC TCTTTCCCCG GAAACAAATT
  TCTACTCTGG CTGGTGGAAA AGCAATTCCC TGGAGTGCTT CCTCCGCAGA TGGCTAACCA
  GAGGGACACA ATTGCCTCGT TAAGGATAGC CTCACTCTTG CTAGGAGGGT AACAGAGAGG
  CAGTTATCCC AGGTGTTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324104757	CHEV_12_77355708	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265745996					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76301495 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4777	CpG island 4777	166 bp proximal
Gm47525	predicted gene, 47525	within coordinates
Mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	mRNA-UTR
Rr403350	regulatory region 403350	324 bp upstream
Rr468112	regulatory region 468112	87 bp proximal
Rr468113	regulatory region 468113	1006 bp proximal
Tssr113934	transcription start site region 113934	488 bp upstream
Tssr113935	transcription start site region 113935	523 bp upstream
Tssr113936	transcription start site region 113936	569 bp upstream
Tssr113937	transcription start site region 113937	611 bp upstream
Tssr113938	transcription start site region 113938	627 bp upstream
Tssr113939	transcription start site region 113939	650 bp upstream
Tssr113940	transcription start site region 113940	732 bp upstream
Tssr113941	transcription start site region 113941	762 bp upstream
Tssr116711	transcription start site region 116711	325 bp downstream
Tssr116712	transcription start site region 116712	351 bp downstream