rs265782165 SNP Detail

Summary

• ID
  rs265782165
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115221824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCCTGGA GGAGGAGGAT
  CAGGAGGAGC GGGATCCGGA TTCGGCAGCA GCCAGAGCTG GCGAGAACCC TCTCCACCCC
  GCAAGAGCTG TATCCTTAAC GTGGCGGTCC GCCCTGGGTG TGTCGCCGGA GCTCCCTTTG
  GCGTCATGGC TAGGTCCCGG AGTTTTTTAA CTTTTCAGAA CCACTCATTT CTCTCCCCCG
  Y
  TCGTCGGCGG TTGTCACGGG CCGCACTCCA CCGCTATTTT CGTAGGCTGT TTGACTGAAT
  GGGTGCCTTT TGCTTTTGGA TAGGACTGTG TCATGGATTC GGGTCAGCTA GGGAAATGAA
  ATACAGTCTG GGTTTTTAAA CAGGACACCA ACAGCCCAAG TTTTGTTTGT CTATTTGTTT
  GTTTGTTTCT TTTTTGCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323484730	CHEV_10_114822975	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265782165					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115221824 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2206	CpG island 2206	within coordinates
Rr402239	regulatory region 402239	890 bp downstream
Rr439213	regulatory region 439213	1520 bp distal
Rr439214	regulatory region 439214	1605 bp distal
Rr439215	regulatory region 439215	950 bp distal
Rr439216	regulatory region 439216	939 bp distal
Rr439217	regulatory region 439217	676 bp distal
Thap2	THAP domain containing, apoptosis associated protein 2	1484 bp upstream
Tssr95813	transcription start site region 95813	1969 bp downstream
Tssr95814	transcription start site region 95814	970 bp downstream
Tssr95815	transcription start site region 95815	898 bp downstream
Tssr95816	transcription start site region 95816	862 bp downstream
Tssr99330	transcription start site region 99330	1583 bp upstream
Tssr99331	transcription start site region 99331	1544 bp upstream
Tssr99332	transcription start site region 99332	1484 bp upstream
Tssr99333	transcription start site region 99333	1410 bp upstream
Tssr99334	transcription start site region 99334	1357 bp upstream
Tssr99335	transcription start site region 99335	1123 bp upstream
Zfc3h1	zinc finger, C3H1-type containing	within coordinates