rs265784139 SNP Detail

Summary

• ID
  rs265784139
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62721579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACCCCAA ACCAATCCTG
  TCGTGGTAGT CCCAAGGTCT GGAAAGTCAT TGCAAATTCC TCAGTAGCCG CTCAGCTCAG
  GATGGTTGGT TCACTTGGAA AGAGTTGTGG GGGTGGGGAA GACAGGGAAT CCTTTTTGTT
  TGTTTGTTTT TTTTGGGTTT TGTTTTGTTT TTTCGAGACA GGGTTTCTCT GTGTAGCCCT
  R
  GCTGTCCTGG AACTCACTCT GTACACCAGG CTGGCTTCGA ACTCAGAAAT CCGCCTGACT
  CTGCCTCCCG AGTGCTAGGA TTAAAGGCGT GCGCCACCAC GCCCGGCTGA GTCAGGGAAT
  CCTTATCGCT GCTCCAGCAT TAAGTCTTTC TTAAAGTCAC ATTAATTTTA GTGGGTCAGA
  AACGTACCCA GTTCAGTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323332078	CHEV_10_62348548	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265784139					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62721579 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1638	CpG island 1638	288 bp proximal
Gm51805	predicted gene, 51805	within coordinates
Rr384811	regulatory region 384811	within coordinates
Tet1	tet methylcytosine dioxygenase 1	within coordinates
Tssr93732	transcription start site region 93732	128 bp downstream
Tssr97890	transcription start site region 97890	1612 bp downstream
Tssr97891	transcription start site region 97891	1661 bp downstream