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rs265785350 SNP Detail
Summary
  • ID
    rs265785350
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr7:19431615 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGTGACTTGG GAGCTCTGCA
GCTCTTCCTG GACCTGGTCA GACAGCGTCT GCACCCAGCG CAGGTAATCC CAGAAGCGGT
TCAGGGCCTG CTCCCAGGGT TGGTTGCTTT GCCACTCGAG CTGATCTGTC ACCTCCGGCT
CTCCCTCGGC TAGGCATCCT GTGTAGAGTA AGTTTAAGGC TGGGTCAGGA CCTACAGTCT
W
TTTGGGTCTC TTTGAAGTGG GTCTGGAGGC TGTGGAGTCT GTTTAGATAC TACAAGCATG
CACTGTCTTG TATCCTATGT AGTTCAGAGC CGAGACTAGG CAGGTGTGGA ATTAGAAAAT
GTATACCCCA CTTTTAAGAG CAACTAAGAA ATCAACTTTT TATTGTGTGT GTGTGTGTGT
GTGTGTGTGT GTGTGTGTGT                                            

W = A/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss370754806 MGP_WTSI_7_20283039 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs265785350 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss370754806 MGP_WTSI_7_20283039 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:19431615 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apoe apolipoprotein E within coordinates
Cpgi18507 CpG island 18507 612 bp distal
Cpgi18508 CpG island 18508 709 bp proximal
D7Mit57 DNA segment, Chr 7, Massachusetts Institute of Technology 57 81 bp proximal
Gm71725 predicted gene, 71725 within coordinates
Rr155346 regulatory region 155346 1015 bp distal
Rr155347 regulatory region 155347 1986 bp proximal
Rr167194 regulatory region 167194 within coordinates
Tssr2112 transcription start site region 2112 1229 bp downstream
Tssr2113 transcription start site region 2113 1199 bp downstream
Tssr2114 transcription start site region 2114 1073 bp downstream
Tssr2115 transcription start site region 2115 1045 bp downstream
Tssr2116 transcription start site region 2116 975 bp downstream
Tssr2117 transcription start site region 2117 921 bp downstream
Tssr2118 transcription start site region 2118 826 bp downstream
Tssr2119 transcription start site region 2119 849 bp upstream
Tssr2120 transcription start site region 2120 776 bp downstream
Tssr2121 transcription start site region 2121 750 bp downstream
Tssr2122 transcription start site region 2122 25 bp upstream
Tssr64880 transcription start site region 64880 1416 bp downstream
Tssr64881 transcription start site region 64881 1353 bp downstream
Tssr64882 transcription start site region 64882 1294 bp downstream
Tssr64883 transcription start site region 64883 1277 bp downstream
Tssr64884 transcription start site region 64884 1249 bp downstream
Tssr64885 transcription start site region 64885 1171 bp downstream
Tssr64886 transcription start site region 64886 1136 bp downstream
Tssr64887 transcription start site region 64887 1118 bp downstream
Tssr64888 transcription start site region 64888 900 bp downstream
Tssr64889 transcription start site region 64889 793 bp downstream
Tssr64890 transcription start site region 64890 759 bp downstream
Tssr64891 transcription start site region 64891 731 bp downstream
Tssr64892 transcription start site region 64892 700 bp downstream
Tssr64893 transcription start site region 64893 606 bp downstream
Tssr64894 transcription start site region 64894 192 bp downstream
Tssr64895 transcription start site region 64895 113 bp downstream
Tssr64896 transcription start site region 64896 89 bp downstream
Tssr70973 transcription start site region 70973 1361 bp upstream
Tssr70974 transcription start site region 70974 1328 bp upstream
Tssr70975 transcription start site region 70975 1303 bp upstream
Tssr70976 transcription start site region 70976 1251 bp upstream
Tssr70977 transcription start site region 70977 1230 bp upstream
Tssr70978 transcription start site region 70978 1207 bp upstream
Tssr70979 transcription start site region 70979 1199 bp upstream
Tssr70980 transcription start site region 70980 1185 bp upstream
Tssr70981 transcription start site region 70981 1161 bp upstream
Tssr70982 transcription start site region 70982 1132 bp upstream
Tssr70983 transcription start site region 70983 1111 bp upstream
Tssr70984 transcription start site region 70984 1051 bp upstream
Tssr70985 transcription start site region 70985 1016 bp upstream
Tssr70986 transcription start site region 70986 987 bp upstream
Tssr70987 transcription start site region 70987 942 bp upstream
Tssr70988 transcription start site region 70988 923 bp upstream
Tssr70989 transcription start site region 70989 885 bp upstream
Tssr70990 transcription start site region 70990 866 bp upstream
Tssr70991 transcription start site region 70991 836 bp upstream
Tssr70992 transcription start site region 70992 824 bp upstream
Tssr70993 transcription start site region 70993 795 bp upstream
Tssr70994 transcription start site region 70994 780 bp upstream
Tssr70995 transcription start site region 70995 747 bp upstream
Tssr70996 transcription start site region 70996 721 bp upstream
Tssr70997 transcription start site region 70997 655 bp upstream
Tssr70998 transcription start site region 70998 635 bp upstream
Tssr70999 transcription start site region 70999 579 bp upstream
Tssr71000 transcription start site region 71000 168 bp upstream
Tssr71001 transcription start site region 71001 102 bp upstream
Tssr71002 transcription start site region 71002 83 bp upstream
Tssr71003 transcription start site region 71003 55 bp upstream
Tssr71004 transcription start site region 71004 37 bp upstream
Tssr71005 transcription start site region 71005 301 bp downstream
Tssr71006 transcription start site region 71006 334 bp downstream
Tssr71007 transcription start site region 71007 392 bp downstream
Tssr71008 transcription start site region 71008 498 bp downstream
Tssr71009 transcription start site region 71009 516 bp downstream
Tssr71010 transcription start site region 71010 660 bp downstream
Tssr71011 transcription start site region 71011 693 bp downstream
Tssr71012 transcription start site region 71012 729 bp downstream
Tssr71013 transcription start site region 71013 1355 bp downstream
Tssr71014 transcription start site region 71014 1904 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory