rs265788647 SNP Detail

Summary

• ID
  rs265788647
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:165435373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAGGGGG TAGGTAATAT
  GTGGAACATG GCTGGGGGCA GCCACAGCCT CGGTGGGAAG TGCCTGGGTG GTGTGGGCTC
  TGAGCATTCA CACAGTAATA ATACATAATT ATTAATAATA CAATAATACA AGAGTCTCGC
  CGCTGAGCTC TGGATGAGAA AATCAAGTCC AAGAGCCGAT GCTCACTCTG CTTCTAAAAG
  R
  CGAAAGAGTT ATTGTGGTGT GGGGACATAC CCAGATCCTC CTCACTGGGT GGGGACAGCC
  ATGACAACGG TAGGTACTTG CTCTGGTATG GTGTCTGTGG TGGGAAGGAA ACAGATAAGA
  CGGGAGACAG AGCCAGCAAT GCCAGAGCCT GACCCATCTA CACTTGGGGA CCCCTTTTAA
  AGAATTACAC ATACAGGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320608366	CHEV_2_165418953	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265788647					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165435373 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12713	CpG island 12713	1151 bp proximal
Eya2	EYA transcriptional coactivator and phosphatase 2	1579 bp upstream
Rr569954	regulatory region 569954	480 bp proximal
Rr569955	regulatory region 569955	1089 bp proximal
Rr569956	regulatory region 569956	1590 bp proximal
Rr569957	regulatory region 569957	1761 bp proximal
Rr569958	regulatory region 569958	1938 bp proximal
Tssr21727	transcription start site region 21727	1556 bp upstream