rs265813478 SNP Detail

Summary

• ID
  rs265813478
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:15538209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTGATAT TTAATCTGTG
  AGGAGGGAAA TTATTTAGAA TTATAAAATG CTTAAACATA TTAATATAAG ATGTTATTTT
  TGTTGTTGGC ATGCCATTTA GGATAGGTTC TCTGAGCATG GACGCTGTTG TTTCAACAGA
  GAAGGCCCAC AGTGGGGGTG GGGGTGGGGG TGGGGGTGGG GTGGGGGTGG GGTTTCTTTG
  S
  CTTGATGAAA CCAGCAAGCA TACCTCCTTA ACTCAGCTAG GCAGCTAGGT GTCAGTTGCC
  TAATTTGTGC AAAAGTTCCT AATTCCTGGT TTGAGAAGTG ATATCTAGAA GCCCTCACAG
  TTTGCATCTT AGTGGAGTGC CTATCCTTTG CCTTTGAGTG TATTCTTTCA TTGGTTTTTC
  TTGACCTTTT AAAAGAGTCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376737686	MGP_WTSI_9_15431357	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	G	C	C	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265813478					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	G	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376737686	MGP_WTSI_9_15431357	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:15538209 () rs orientation: forward

Symbol	Name	Function Class
4930540M03Rik	RIKEN cDNA 4930540M03 gene	within coordinates
Cpgi21372	CpG island 21372	808 bp proximal
Deup1	deuterosome assembly protein 1	within coordinates
Rr674358	regulatory region 674358	730 bp proximal
Rr674359	regulatory region 674359	980 bp proximal
Rr674360	regulatory region 674360	1033 bp proximal
Tssr83870	transcription start site region 83870	1012 bp upstream
Tssr88249	transcription start site region 88249	907 bp downstream
Tssr88250	transcription start site region 88250	927 bp downstream
Tssr88251	transcription start site region 88251	957 bp downstream
Tssr88252	transcription start site region 88252	984 bp downstream
Tssr88253	transcription start site region 88253	997 bp downstream
Tssr88254	transcription start site region 88254	1370 bp downstream
Tssr88255	transcription start site region 88255	1413 bp downstream