rs265821239 SNP Detail

Summary

• ID
  rs265821239
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:32126753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCGCGCC ACTACCTCGC
  GCTCCGGCTG CGCACGCGCG TCTCAGAGTC TGTCGGCCGC GTAGACACAA CTAGTTGAGC
  GTCGATCCGT GGCCGCTGCA GAGTAATCGA GCGGCCTCGC CCCCAACGGT CGATCCTGCC
  TGGCGGTTCG CAGGCCTGGC TCCACATGGG GAGCCACTCT ACGGGACTCG AAGAAACGCT
  S
  GTAGGTTTTG GAGTGCCAGA TTTGAGAGCC CTCCTGGGGT CTGGGATCCG GCTTAGGGGC
  GGCGCGCTAG GGACGGTGGA TGTTCGGATC CTGGCTGAGC AAGTCGTTTC CAGGGCGGCC
  TCTTGTAAAA GCCAGAGTGG GAAGAACTGT AGAGAAAGAA CGGGCTCGGG GCACAAGCAA
  CTCTAGGAGG AGAGGAATGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353553918	MGP_WTSI_2_32092261	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265821239					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353553918	MGP_WTSI_2_32092261	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32126753 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11499	CpG island 11499			within coordinates
Gm13610	predicted gene 13610			253 bp upstream
Pomt1	protein-O-mannosyltransferase 1			Coding-Synonymous
				Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Splice-Site
Rr554847	regulatory region 554847			358 bp distal
Rr554848	regulatory region 554848			141 bp distal
Rr554849	regulatory region 554849			663 bp proximal
Tssr17254	transcription start site region 17254			146 bp downstream
Tssr17255	transcription start site region 17255			119 bp downstream
Tssr17256	transcription start site region 17256			40 bp downstream
Tssr17257	transcription start site region 17257			556 bp upstream
Tssr23466	transcription start site region 23466			378 bp upstream
Tssr23467	transcription start site region 23467			368 bp upstream
Tssr23468	transcription start site region 23468			348 bp upstream