rs265822474 SNP Detail

Summary

• ID
  rs265822474
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:101261083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGGGCAG GGCTCTCTGG
  GAGGGGTGGC TTATATGGAG CTTCAACTCT GGAGCCTGGG TTTCTAGGCA AGCTGCCCTA
  CCCTACGCTC TGCCTGGCTG CCCCTAGAAT GCTGGCCCTA CCTCGGATTG GTAGGGTGTG
  GACCACACTG CAGGACAGGG ATCAGGCATG CTTGGTTCCC CATGCCTACC TTCCCCCCCC
  S
  CCCCCCGCCC CCAATCCAGG GTGGAGGCCC CTCAGAAGGA GACCTGGACC TGAGGACAGG
  CTCAGGGTAT GCGATGTTTA TCTGCTCAGC CTCAGCTGCC TTGTCCTGGA GGACTTGCCC
  ACTGCTTGAT CTTAGAGGGT CACCTGTCCT GAGCCTTCCT AGGCTAGCCA GCTCAGTTCA
  GCCAGTCTTG GTCAACTTCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss395194618	MGP_WTSI_15_101193633	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs265822474					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395194618	MGP_WTSI_15_101193633	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:101261083 () rs orientation: forward

Symbol	Name	Function Class
Gm35853	predicted gene, 35853	within coordinates
Krt80	keratin 80	within coordinates
Rr306049	regulatory region 306049	83 bp distal
Rr311441	regulatory region 311441	917 bp proximal
Tssr133285	transcription start site region 133285	1560 bp upstream
Tssr136556	transcription start site region 136556	1329 bp downstream
Tssr136557	transcription start site region 136557	1370 bp downstream
Tssr136558	transcription start site region 136558	1387 bp downstream