rs265833961 SNP Detail

Summary

• ID
  rs265833961
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101275850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGCCCTG TCTCAAACAA
  ATCAAAGCAA AGGCTGAGGC ATGTGGGAGT ATTGGTTGGT ATGTGAGGGG CAAGGAAAAG
  AAAGCCGCCG TTTGAGGTGG TGAGCAGAGT CGAGAGTATT ATATCCTTGG CAAAGAAGCC
  CTGGGATCCT CTGTCCTTCT CTCTCTTCCT CGGAGTACAG CCAAAGTCAT CCTTCTCTTC
  Y
  TCCTCTTCAG GGCGCTGGCA TTGGATGGAG CCAGTCAAGG TTTTAAAACT TTGGCTGCAA
  CTATGGGGCC AGGATTCGAT CATTTGTTGT TGTTGTATAT CAAGCAAAAA GAAGAGCGTT
  GGGTATACAA TAGATCTTTT TTTACTTTTT TTTTTTTTTT TTTTTTTTGA GATTAGGTCT
  CAATAAGTAA GTAATAAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362614046	MGP_WTSI_4_101091258	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265833961					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362614046	MGP_WTSI_4_101091258	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101275850 () rs orientation: forward

Symbol	Name	Function Class
Ak4	adenylate kinase 4	624 bp upstream
Cpgi14500	CpG island 14500	406 bp proximal
Gm69573	predicted gene, 69573	119 bp downstream
Rr596144	regulatory region 596144	1509 bp distal
Rr596145	regulatory region 596145	151 bp proximal
Rr596146	regulatory region 596146	663 bp proximal
Rr596147	regulatory region 596147	1834 bp proximal
Tssr37989	transcription start site region 37989	648 bp upstream
Tssr37990	transcription start site region 37990	682 bp upstream
Tssr37991	transcription start site region 37991	706 bp upstream
Tssr37992	transcription start site region 37992	1043 bp upstream
Tssr37993	transcription start site region 37993	1500 bp upstream