rs265838156 SNP Detail

Summary

• ID
  rs265838156
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:34993852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGCCCTCGC CCCCGCGCCG
  GGCCTGGGCT TCCCTAGCCC AGCTCGCACC CGGGGGCCGT CGGAGCCGCC GCGCGCCCAG
  CTCTACGCGC CTGGCGCCCT CCCCACGCGG GCGTCCCCGA CTCCCGCGCG CGCTCAGGCT
  CCCAGTTGGG AACCAAGGAG GGGGAGGATG GGGGGGGGGG GTGTGCGCCG ACCCGGAAAC
  K
  CCATATAAGG AGCAGGAAGG ATCCCCCGCC GGAACAGACC TTATTTGGGC AGCGCCTTAT
  ATGGAGTGGC CCAATATGGC CCTGCCGCTT CCGGCTCTGG GAGGAGGGGC GAGCGGGGGT
  TGGGGCGGGG GCAAGCTGGG AACTCCAGGC GCCTGGCCCG GGAGGCCACT GCTGCTGTTC
  CAATACTAGG CTTTCCAGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400248332	MGP_WTSI_18_35020453	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265838156					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400248332	MGP_WTSI_18_35020453	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34993852 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9830	CpG island 9830	within coordinates
Egr1	early growth response 1	mRNA-UTR
Rr370358	regulatory region 370358	356 bp upstream
Rr405587	regulatory region 405587	within coordinates
Rr535727	regulatory region 535727	966 bp distal
Rr535728	regulatory region 535728	767 bp distal
Tssr150487	transcription start site region 150487	162 bp upstream
Tssr150488	transcription start site region 150488	401 bp upstream
Tssr150489	transcription start site region 150489	1671 bp upstream
Tssr150490	transcription start site region 150490	1697 bp upstream
Tssr150491	transcription start site region 150491	1725 bp upstream
Tssr150492	transcription start site region 150492	1797 bp upstream
Tssr150493	transcription start site region 150493	1874 bp upstream
Tssr152831	transcription start site region 152831	373 bp upstream
Tssr152832	transcription start site region 152832	628 bp downstream
Tssr152833	transcription start site region 152833	1908 bp downstream
Tssr152834	transcription start site region 152834	1967 bp downstream