rs265840862 SNP Detail

Summary

• ID
  rs265840862
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46141631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCACACACG TAGACTCTCT
  GCGCACACAG CTAGCGCCCC ACAGCGAACA GATGCGCGAG AGCCTGGCCC AGCGCCTGGC
  TGAGCTCAAG AGCAACCCTA CCTTGAACGA GTACCACACC AGGGCCAAAA CCCACCTGAA
  GACACTTGGC GAGAAAGCCA GACCTGCGCT GGAGGACCTG CGCCATAGTC TGATGCCCAT
  R
  CTGGAGACGC TTAAGACCCA AGTCCAGAGT GTGATCGACA AGGCCAGCGA GACTCTGACT
  GCCCAGTGAG GTGCCCGCTT CCACTCCCCA CCCCCGCATT GGCTTTCTTA CAATAAACCT
  TTCCAAAATG GAATAGCTTC TTTCTTTGGG GGACATAGGG CGGGCGCTAA GGGGACATCA
  AGGGACGTGA GAACATGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377451224	MGP_WTSI_9_46038416	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265840862					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377451224	MGP_WTSI_9_46038416	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46141631 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	within coordinates
Cpgi21701	CpG island 21701	within coordinates
Rr195182	regulatory region 195182	1431 bp distal
Rr195183	regulatory region 195183	631 bp distal
Rr206362	regulatory region 206362	within coordinates
Tssr84839	transcription start site region 84839	1959 bp downstream
Tssr84840	transcription start site region 84840	1619 bp downstream
Tssr84841	transcription start site region 84841	1489 bp downstream
Tssr84842	transcription start site region 84842	1387 bp downstream
Tssr84843	transcription start site region 84843	1353 bp downstream
Tssr84844	transcription start site region 84844	1179 bp downstream
Tssr84845	transcription start site region 84845	1142 bp downstream
Tssr84846	transcription start site region 84846	1087 bp downstream
Tssr84847	transcription start site region 84847	425 bp downstream
Tssr84848	transcription start site region 84848	347 bp downstream
Tssr84849	transcription start site region 84849	311 bp downstream
Tssr84850	transcription start site region 84850	269 bp downstream
Tssr84851	transcription start site region 84851	234 bp downstream
Tssr84852	transcription start site region 84852	137 bp downstream
Tssr84853	transcription start site region 84853	103 bp downstream
Tssr84854	transcription start site region 84854	90 bp downstream
Tssr84855	transcription start site region 84855	70 bp downstream
Tssr84856	transcription start site region 84856	59 bp downstream
Tssr84857	transcription start site region 84857	52 bp upstream
Tssr84858	transcription start site region 84858	71 bp upstream
Tssr89313	transcription start site region 89313	358 bp upstream
Tssr89314	transcription start site region 89314	330 bp upstream
Tssr89315	transcription start site region 89315	307 bp upstream
Tssr89316	transcription start site region 89316	287 bp upstream
Tssr89317	transcription start site region 89317	278 bp upstream
Tssr89318	transcription start site region 89318	254 bp upstream
Tssr89319	transcription start site region 89319	244 bp upstream
Tssr89320	transcription start site region 89320	231 bp upstream
Tssr89321	transcription start site region 89321	206 bp upstream
Tssr89322	transcription start site region 89322	123 bp upstream
Tssr89323	transcription start site region 89323	71 bp upstream
Tssr89324	transcription start site region 89324	43 bp upstream
Tssr89325	transcription start site region 89325	18 bp upstream
Tssr89326	transcription start site region 89326	7 bp downstream
Tssr89327	transcription start site region 89327	128 bp downstream