rs265859153 SNP Detail

Summary

• ID
  rs265859153
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:13775670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTGCTTG TAGGCTTGAA
  TACTTTTTTA AAAATTCTCT AATAAAATAT TTCTTCCTCT TCTCCTGAGG TAGTTTCACA
  GGTTACAGAT TAATCTTCTG AGGAGAACAG AGTAGAGAGT GTGCCTGTCT CCTGAGAGCA
  ACCTCACTGG AGGGCTGCTA GCTTACAGAG TCCCCGTGTC AGAGCCACTT CTGTCCTGTG
  R
  CCAGTGAACC CTCACTGGGC TGGTGAGGTG AGTTAGGTGT GGCCTTAGTA TCAAGGGTGG
  AGACATTCTG CCTGGGTTTC CCAGAGCATG GCCAGGCGCC TAAGCTGTCA TGTGATCACT
  TTGGATGTGT GTAAGAGAAA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GCGCACATGA
  TATTTATTTC TAAAATGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397663366	MGP_WTSI_17_13748274	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	G	G	G	G	G	G	G	G	A	A	G	A	G	A	G	G	G	G	A	G	A	G	G	A	G	A	G	G	G	A	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265859153					SNP	A	A	A	A	A	A	A	A	G	G	G	G	G	G	G	G	A	A	G	A	G	A	G	G	G	G	A	G	A	G	G	A	G	A	G	G	G	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397663366	MGP_WTSI_17_13748274	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:13775670 () rs orientation: forward

Symbol	Name	Function Class
2700054A10Rik	RIKEN cDNA 2700054A10 gene	1314 bp upstream
Gm49936	predicted gene, 49936	within coordinates
Rr392310	regulatory region 392310	497 bp upstream
Rr522380	regulatory region 522380	within coordinates
Rr522381	regulatory region 522381	971 bp proximal