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rs265859902 SNP Detail
Summary
  • ID
    rs265859902
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr19:5848277 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCATGGTCAA ATTAGACCCC
TGACTTTCTG GAAACAAAAT ATGTAGTTAC CTTTTACTCT GACCATCATC TCCCACCTGC
CTAAGGTACT TAGTCCTTAG TTAGACGGCC TCTATGCCAG GCCTGCAATT ATTAAATGCT
CATCACTGCA TGGAGAATAA AATTTGTCTT TCCTGCCTTA AAGTTAATTT CGGTCTTCTG
S
CTCAAATCCT GATCTGGTCC ACTTAAGTGT TCGAAGTCAA GTTTCTGAAA AGATTAGAGA
AGAACATCCC CCCAAAATTG CCCACACTAA CTACAGACAA CAAACAAGAC TTTATTTAAA
TAAGGAGACA GCCTTCTAAA TACATACATT CTCTAGTGAA GTATTTTATT AATTTGTATA
ATTTAATGAT TTTAAGCACA                                            

S = C/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss401662578 MGP_WTSI_19_5798249 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs265859902 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss401662578 MGP_WTSI_19_5798249 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:5848277 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Gm55521 predicted gene, 55521 751 bp downstream
Malat1 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) within coordinates
Tssr5415 transcription start site region 5415 1383 bp upstream
Tssr5416 transcription start site region 5416 934 bp upstream
Tssr5417 transcription start site region 5417 777 bp downstream
Tssr5418 transcription start site region 5418 1260 bp downstream
Tssr5419 transcription start site region 5419 1914 bp downstream
Tssr5420 transcription start site region 5420 1931 bp downstream
Tssr157645 transcription start site region 157645 1868 bp upstream
Tssr157646 transcription start site region 157646 1766 bp upstream
Tssr157647 transcription start site region 157647 1679 bp upstream
Tssr157648 transcription start site region 157648 1512 bp upstream
Tssr157649 transcription start site region 157649 1420 bp upstream
Tssr157650 transcription start site region 157650 1355 bp upstream
Tssr157651 transcription start site region 157651 1285 bp upstream
Tssr157652 transcription start site region 157652 1145 bp upstream
Tssr157653 transcription start site region 157653 1061 bp upstream
Tssr157654 transcription start site region 157654 1007 bp upstream
Tssr157655 transcription start site region 157655 981 bp upstream
Tssr157656 transcription start site region 157656 948 bp upstream
Tssr157657 transcription start site region 157657 828 bp upstream
Tssr157658 transcription start site region 157658 722 bp upstream
Tssr157659 transcription start site region 157659 618 bp upstream
Tssr157660 transcription start site region 157660 522 bp upstream
Tssr157661 transcription start site region 157661 489 bp upstream
Tssr157662 transcription start site region 157662 396 bp upstream
Tssr157663 transcription start site region 157663 335 bp upstream
Tssr157664 transcription start site region 157664 221 bp upstream
Tssr157665 transcription start site region 157665 212 bp upstream
Tssr157666 transcription start site region 157666 180 bp upstream
Tssr157667 transcription start site region 157667 61 bp downstream
Tssr157668 transcription start site region 157668 108 bp downstream
Tssr157669 transcription start site region 157669 123 bp downstream
Tssr157670 transcription start site region 157670 143 bp downstream
Tssr157671 transcription start site region 157671 160 bp downstream
Tssr157672 transcription start site region 157672 209 bp downstream
Tssr157673 transcription start site region 157673 226 bp downstream
Tssr157674 transcription start site region 157674 256 bp downstream
Tssr157675 transcription start site region 157675 275 bp downstream
Tssr157676 transcription start site region 157676 286 bp downstream
Tssr157677 transcription start site region 157677 308 bp downstream
Tssr157678 transcription start site region 157678 320 bp downstream
Tssr157679 transcription start site region 157679 357 bp downstream
Tssr157680 transcription start site region 157680 412 bp downstream
Tssr157681 transcription start site region 157681 441 bp downstream
Tssr157682 transcription start site region 157682 459 bp downstream
Tssr157683 transcription start site region 157683 485 bp downstream
Tssr157684 transcription start site region 157684 501 bp downstream
Tssr157685 transcription start site region 157685 511 bp downstream
Tssr157686 transcription start site region 157686 526 bp downstream
Tssr157687 transcription start site region 157687 595 bp downstream
Tssr157688 transcription start site region 157688 645 bp downstream
Tssr157689 transcription start site region 157689 676 bp downstream
Tssr157690 transcription start site region 157690 754 bp downstream
Tssr157691 transcription start site region 157691 800 bp downstream
Tssr157692 transcription start site region 157692 854 bp downstream
Tssr157693 transcription start site region 157693 911 bp downstream
Tssr157694 transcription start site region 157694 969 bp downstream
Tssr157695 transcription start site region 157695 1033 bp downstream
Tssr157696 transcription start site region 157696 1054 bp downstream
Tssr157697 transcription start site region 157697 1103 bp downstream
Tssr157698 transcription start site region 157698 1119 bp downstream
Tssr157699 transcription start site region 157699 1177 bp downstream
Tssr157700 transcription start site region 157700 1226 bp downstream
Tssr157701 transcription start site region 157701 1244 bp downstream
Tssr157702 transcription start site region 157702 1280 bp downstream
Tssr157703 transcription start site region 157703 1331 bp downstream
Tssr157704 transcription start site region 157704 1357 bp downstream
Tssr157705 transcription start site region 157705 1378 bp downstream
Tssr157706 transcription start site region 157706 1426 bp downstream
Tssr157707 transcription start site region 157707 1472 bp downstream
Tssr157708 transcription start site region 157708 1482 bp downstream
Tssr157709 transcription start site region 157709 1494 bp downstream
Tssr157710 transcription start site region 157710 1513 bp downstream
Tssr157711 transcription start site region 157711 1532 bp downstream
Tssr157712 transcription start site region 157712 1569 bp downstream
Tssr157713 transcription start site region 157713 1596 bp downstream
Tssr157714 transcription start site region 157714 1647 bp downstream
Tssr157715 transcription start site region 157715 1664 bp downstream
Tssr157716 transcription start site region 157716 1708 bp downstream
Tssr157717 transcription start site region 157717 1735 bp downstream
Tssr157718 transcription start site region 157718 1780 bp downstream
Tssr157719 transcription start site region 157719 1834 bp downstream
Tssr157720 transcription start site region 157720 1853 bp downstream
Tssr157721 transcription start site region 157721 1889 bp downstream
Tssr157722 transcription start site region 157722 1906 bp downstream
Tssr157723 transcription start site region 157723 1981 bp downstream
Tssr157724 transcription start site region 157724 1990 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory