rs265876386 SNP Detail

Summary

• ID
  rs265876386
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:42207050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGATGCTA TAGCTGATGC
  CTCTGTGGTA GGGGGAGTTG AGGAGCTCTA TCTTTCACCC ATCATTGACC GTCCTGTTTC
  TTATTCTTCC CCTGGCGTTA GATTGGGGAT AGTTTGTGTT ATGCCGACTA ATAGCCGTGT
  TAAGAGCCGT GTTGCTTACA GTCGCAAGCA CGGTAATAGC CGCCTTTTCC TTATGCGTTT
  W
  AACTAAAGTG AAAACATACA TCTAAAACCT TAGTCTGGGA TACATGTTCT TTACCTTAGA
  GGCGTTCTTC CAGGGAATTA ATATTTCAGC ATTTTCATGT GGTAGGCAAA GCTTCTACAT
  TGTGTAGCTT ACTCCTCAGT CCTTAGCCCG TTTGGGGTGG ATAATGTTTC CTGATTTTAC
  AGCTTGGGAA ATCTGATCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388403622	MGP_WTSI_13_42148943	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265876386					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388403622	MGP_WTSI_13_42148943	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:42207050 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5503	CpG island 5503	17 bp distal
Gm61288	predicted gene, 61288	1474 bp upstream
Gm61314	predicted gene, 61314	1773 bp upstream
Hivep1	human immunodeficiency virus type I enhancer binding protein 1	within coordinates
Rr281297	regulatory region 281297	within coordinates
Rr403731	regulatory region 403731	1865 bp downstream
Rr403732	regulatory region 403732	517 bp downstream
Tssr119427	transcription start site region 119427	1801 bp downstream
Tssr119428	transcription start site region 119428	1699 bp downstream
Tssr119429	transcription start site region 119429	1567 bp downstream
Tssr119430	transcription start site region 119430	1502 bp downstream
Tssr119431	transcription start site region 119431	1446 bp downstream
Tssr119432	transcription start site region 119432	1206 bp downstream
Tssr119433	transcription start site region 119433	552 bp downstream
Tssr122226	transcription start site region 122226	770 bp upstream
Tssr122227	transcription start site region 122227	630 bp upstream