rs265884428 SNP Detail

Summary

• ID
  rs265884428
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44396860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTCCACA GTTACCTGGC
  AAAAGCCAGG TATGCCTGAC TCACTATAAA AGGGGCTGCT TGCCCCTCAG TCCCCACACT
  CTCTTCCTTC TCTGTCCCTT CTTGCCCTAT TCCCCTCTCT CTACACGTGT TCATGGCCGG
  CCTCTACTCC CTCTCCCTAC CTTTCTCTGT CTCTACTACC TCTCAACTCC CCTCCCCATG
  Y
  CCTAAATAAA CTCTATTCTA CACTATACCC ACTGTGGTTG GTACCTCAAG GGGAAGGGAT
  GCCTCAGCAT GGGCCCGCAG AGGCACCCCC TTCCCCAGCA CCATACCTCG CCCTACCAAA
  CATATCCCTG GCTTCCCTGG CTTTTTAAAT AGAACATAAC AGTATATATT TGAGATGCTC
  AAATAATAGA TACAAATAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371162717	MGP_WTSI_7_52002806	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265884428					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371162717	MGP_WTSI_7_52002806	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44396860 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18992	CpG island 18992	1926 bp distal
Cpgi18993	CpG island 18993	948 bp proximal
Rr400296	regulatory region 400296	859 bp upstream
Rr646209	regulatory region 646209	1650 bp distal
Rr646210	regulatory region 646210	1929 bp distal
Rr646211	regulatory region 646211	266 bp proximal
Rr646212	regulatory region 646212	603 bp proximal
Rr646213	regulatory region 646213	988 bp proximal
Rr646214	regulatory region 646214	1171 bp proximal
Tssr66420	transcription start site region 66420	1067 bp upstream
Tssr66421	transcription start site region 66421	1166 bp upstream
Tssr66422	transcription start site region 66422	1204 bp upstream
Tssr66423	transcription start site region 66423	1470 bp upstream
Tssr66424	transcription start site region 66424	1552 bp upstream
Vrk3	vaccinia related kinase 3	1189 bp upstream
Zfp473	zinc finger protein 473	within coordinates