rs265888558 SNP Detail

Summary

• ID
  rs265888558
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87842215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTCGAGCT TAATATCCTG
  TGTCAGAATT CCAAATATAC CAATTAAATC ATTGTTCTTG TAATTATCTG ACATCAACAT
  GCAATTCCTT TTACCTAGTT AACCAGTTAT ATCAGAACTA ACTGTAACTA GGCAGTAGGC
  GCTGGGAATT AGATTTAAAT GAAGATCTGC AGGTGATTTT GTTTTATAGC TAACCCTATG
  R
  ATCATCTATT ATATAATGAG CTATGTATGT ATTCTTTCAA TCTAGAGCTC TTGTTTCCTC
  TGTTATTGTC ACCATATATA CATTTTGAGG GGAATTAAAG GGAAGAAAAT TTGAACTTAC
  AGAAACGGAA TGTTGTGGAG TGGCAGGGAA TTGGACGGTG GGGTTAAGAA GTTCTAGGTA
  CTGCAGAAGG TCTTGGACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365777282	MGP_WTSI_5_88123381	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265888558					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365777282	MGP_WTSI_5_88123381	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87842215 () rs orientation: forward

Symbol	Name	Function Class
Csn2	casein beta	within coordinates
D5Mit12	DNA segment, Chr 5, Massachusetts Institute of Technology 12	378 bp distal
D5Mit16	DNA segment, Chr 5, Massachusetts Institute of Technology 16	338 bp distal
D5Mit16.1	DNA segment, Chr 5, Massachusetts Institute of Technology 16.1	181 bp distal
D5Mit16.2	DNA segment, Chr 5, Massachusetts Institute of Technology 16.2	493 bp distal
Tssr1529	transcription start site region 1529	198 bp upstream
Tssr46883	transcription start site region 46883	145 bp upstream
Tssr46884	transcription start site region 46884	158 bp upstream
Tssr46885	transcription start site region 46885	186 bp upstream
Tssr46886	transcription start site region 46886	214 bp upstream
Tssr46887	transcription start site region 46887	231 bp upstream
Tssr46888	transcription start site region 46888	300 bp upstream
Tssr46889	transcription start site region 46889	349 bp upstream
Tssr46890	transcription start site region 46890	364 bp upstream
Tssr46891	transcription start site region 46891	408 bp upstream
Tssr46892	transcription start site region 46892	412 bp upstream
Tssr46893	transcription start site region 46893	440 bp upstream
Tssr46894	transcription start site region 46894	487 bp upstream
Tssr46895	transcription start site region 46895	510 bp upstream
Tssr46896	transcription start site region 46896	605 bp upstream
Tssr51613	transcription start site region 51613	1677 bp upstream
Tssr51614	transcription start site region 51614	1614 bp upstream
Tssr51615	transcription start site region 51615	1558 bp upstream
Tssr51616	transcription start site region 51616	1524 bp upstream
Tssr51617	transcription start site region 51617	1515 bp upstream
Tssr51618	transcription start site region 51618	174 bp downstream
Tssr51619	transcription start site region 51619	212 bp downstream
Tssr51620	transcription start site region 51620	221 bp downstream
Tssr51621	transcription start site region 51621	230 bp downstream
Tssr51622	transcription start site region 51622	268 bp downstream
Tssr51623	transcription start site region 51623	293 bp downstream
Tssr51624	transcription start site region 51624	311 bp downstream
Tssr51625	transcription start site region 51625	317 bp downstream
Tssr51626	transcription start site region 51626	327 bp downstream
Tssr51627	transcription start site region 51627	342 bp downstream
Tssr51628	transcription start site region 51628	383 bp downstream
Tssr51629	transcription start site region 51629	475 bp downstream
Tssr51630	transcription start site region 51630	569 bp downstream
Tssr51631	transcription start site region 51631	618 bp downstream
Tssr51632	transcription start site region 51632	912 bp downstream
Tssr51633	transcription start site region 51633	1697 bp downstream
Tssr51634	transcription start site region 51634	1819 bp downstream