rs265889253 SNP Detail

Summary

• ID
  rs265889253
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108693279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTGCAGG CAGTTGTGAT
  CTGCCTCTAA CATGGGAACT GAACTTGAGT CCACTGAAGA GCAGCAGGTT CTTTTCTGGT
  CCCAGCCCCT ATTTGTTTGT TTGTTTGGTT GGTTTTTTGA GACAGGGTTT CTCTATAGCC
  CTGGCTGTCC TGGAACTCAC TCTGTAGACC AGGCTGGCCT GGAACTCAGA AATCCTCCTG
  Y
  CTCTGCCTCC CGAGTGCTGG GATTAAAGGC GTGCGCCATC ACTGCCCAGC TGTTTGTTTT
  TAGAGCTCTT TATCTTTACA TTCATTGGTG GGCATTGAGA CTGAGTGGAA ATTCAATGAG
  TCACCTCAGT TCAGTATTGA TTTTCGATCA TCAGCCATGT TTTGATCATT GACTCGGGTA
  CTAGAGACAT GACAATGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362789978	MGP_WTSI_4_108508687	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265889253					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362789978	MGP_WTSI_4_108508687	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108693279 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14564	CpG island 14564	1943 bp distal
Cpgi14565	CpG island 14565	942 bp distal
Rr376990	regulatory region 376990	1015 bp downstream
Rr597225	regulatory region 597225	1978 bp distal
Rr597226	regulatory region 597226	1471 bp distal
Rr597227	regulatory region 597227	1887 bp proximal
Tssr38313	transcription start site region 38313	1465 bp downstream
Tssr38314	transcription start site region 38314	1377 bp downstream
Tssr38315	transcription start site region 38315	1331 bp downstream
Tssr38316	transcription start site region 38316	1275 bp downstream
Tssr42740	transcription start site region 42740	1828 bp upstream
Txndc12	thioredoxin domain containing 12 (endoplasmic reticulum)	within coordinates