rs265902452 SNP Detail

Summary

• ID
  rs265902452
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:100576928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCGGAAG TGTACCCCAA
  GGCCAAGCTC GCAGTCTCAA AAGGAGAACC CTTTCCGGTT CACATCTCCT TAGTTATCCT
  AGGAAGAGTG CGTGAGCGAA GCATATGCCA AACTCGAGGG CTCAAAAGAT AACCATTTCT
  GGTTCACATG AGTTACCCTG GGAAGAGTGA GTGGAGCCGA TTCCGAGCTC TCTGTCTTGA
  R
  GGGTAACCCT TTCCGGTTCA TGTTAGTTAT CCTAGGAAAT GTGAGTGAAG CGTATGCCAA
  GCTCGCCCTC TCGAAGGGTG ACCCTTCCTG TTCACCGTAG CTATCCGCGC TTGCACAACC
  TTTGCACTTT CCTTTTTTTT TGCAGTCAAG TTGATTTCCT AGTTCATGAG TAACCAGAAG
  CAATAAAATA GAACACCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325083839	CHEV_15_100509478	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265902452					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100576928 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cela1	chymotrypsin-like elastase family, member 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr509797	regulatory region 509797			196 bp distal
Rr509798	regulatory region 509798			within coordinates
Tssr136473	transcription start site region 136473			954 bp upstream
Tssr136474	transcription start site region 136474			925 bp upstream
Tssr136475	transcription start site region 136475			869 bp upstream
Tssr136476	transcription start site region 136476			197 bp upstream