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rs265904079 SNP Detail
Summary
  • ID
    rs265904079
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr13:23718762 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GAGTCTAGTA ACATGGTTAA
    TTTAGCTTGT GGAAAAACCT ATATTAATGT TTCAAGCACA AAACCATAAT TCTGGTAGGC
    TGAGGTAATT CTTAGGCAAC TGCTTTGTCT TCCTCACGCA GAGAAATATT GGATGTAGCA
    TAAACATAGA TTTACACGTT GCACAAAACT TTTGGTCTTG CAGTCCTCTA CATCTTCGTA
    Y
    TGCTCCGGAG AGGCAGCAGA CATTCGGGGT TGGGAGAAAA TACAAAGGGT CTTACGGAAA
    TTGTTAGGCA AGTCTTTACA AAGTCGCAAG ATTCAGGATA CTTGACCTGT GGTTCCTGTT
    ACATTACTGC TTGCTTTGTG TCACTTTAAA CACTCCTGGA GCAAAGACGT AGTTCGGCTT
    GAGTCAAGGA AAAAGGACCT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss387984367 MGP_WTSI_13_23626461 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs265904079 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss387984367 MGP_WTSI_13_23626461 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr13:23718762 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi5359 CpG island 5359 565 bp proximal
Gm55640 predicted gene, 55640 338 bp upstream
Gm60769 predicted gene, 60769 889 bp upstream
H2ac10 H2A clustered histone 10 288 bp downstream
H3c8 H3 clustered histone 8 826 bp upstream
Rr281120 regulatory region 281120 within coordinates
Rr403647 regulatory region 403647 650 bp downstream
Rr403648 regulatory region 403648 544 bp upstream
Tssr4007 transcription start site region 4007 887 bp upstream
Tssr118828 transcription start site region 118828 710 bp downstream
Tssr118829 transcription start site region 118829 819 bp upstream
Tssr121712 transcription start site region 121712 931 bp upstream
Tssr121713 transcription start site region 121713 573 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory