rs265914189 SNP Detail

Summary

• ID
  rs265914189
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108637219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGCGACC AAGGGGATAT
  TCCTCTCCCG GCTTGAGTCA GACGCGGGCG GAATCCGTCC TCCCCCGTTC CCTCCCAGGA
  GACGGGAACT TACTTCATTT CCCTGGGGCA GGTTCGCCCA CGTTACCAAC TCTTCCCCCC
  CCCCCTCCAG CTCCCCGGTT CCTTCCAGCT TCCGTGCCCC CCACCCAGCT GGGCAGGACT
  Y
  TGGCTGCGCT GCCACCCCCT CTTTCGGGGA AAGGAGGCCG CAGCCGCAGA CACCTGGGGG
  CCCGAGGTTT GGAGGGGGGG GGGGCACTTC GCAGCCGCCA GAGCGTTGTC CAACACGTGA
  GGCTCATGTG ATGAAGCCGG GGGAGGGCGG GCAGGTCGCT CCTTCCCTCC CCGGCAGCGG
  CCAGACGTGC TTGGAGTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369592095	MGP_WTSI_6_108610252	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265914189					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369592095	MGP_WTSI_6_108610252	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108637219 () rs orientation: forward

Symbol	Name	Function Class
0610040F04Rik	RIKEN cDNA 0610040F04 gene	within coordinates
4833447P13Rik	RIKEN cDNA 4833447P13 gene	718 bp upstream
Bhlhe40	basic helix-loop-helix family, member e40	371 bp upstream
Cpgi17812	CpG island 17812	within coordinates
Gm17055	predicted gene 17055	665 bp downstream
Rr399817	regulatory region 399817	1324 bp upstream
Rr636153	regulatory region 636153	1748 bp distal
Rr636154	regulatory region 636154	1247 bp distal
Rr636155	regulatory region 636155	321 bp distal
Rr636156	regulatory region 636156	within coordinates
Rr636157	regulatory region 636157	466 bp proximal
Rr636158	regulatory region 636158	651 bp proximal
Rr636159	regulatory region 636159	1345 bp proximal
Tssr58067	transcription start site region 58067	1637 bp downstream
Tssr58068	transcription start site region 58068	1588 bp downstream
Tssr58069	transcription start site region 58069	1488 bp downstream
Tssr58070	transcription start site region 58070	1445 bp downstream
Tssr58071	transcription start site region 58071	591 bp downstream
Tssr58072	transcription start site region 58072	176 bp upstream
Tssr58073	transcription start site region 58073	222 bp upstream
Tssr58074	transcription start site region 58074	261 bp upstream
Tssr58075	transcription start site region 58075	358 bp upstream
Tssr58076	transcription start site region 58076	514 bp upstream
Tssr58077	transcription start site region 58077	597 bp upstream
Tssr58078	transcription start site region 58078	1489 bp upstream
Tssr58079	transcription start site region 58079	1732 bp upstream
Tssr62390	transcription start site region 62390	836 bp upstream
Tssr62391	transcription start site region 62391	435 bp upstream