rs265919535 SNP Detail

Summary

• ID
  rs265919535
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44889269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGGGACA GCAGCTGCCT
  TCTGAGACAT GTCTCATCTA TTTTCTTTCT GTATGTGTAT TTGTATGTGT TAGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGCGCGCGC GCGCCTTTGG AGGCCAGAGG
  ACAACATTGG AAGCTGTTCA TCTTTTTTTA AAAAAATTTT AACGATGTGT GTGTGTGTGT
  R
  TGTCTGCGCC ACATGGTGCT TATAGAGGGC AGAAGATAGA TAAATTTTCG GGACTGGGCC
  TCTCCTGCCA CAGGCTGTGC TCCAAGGCAG GTTCTGCCAT CTCCAATAAG CCAAGTAAAA
  GAACCAAATT TCTAGAGGAA ACAGAAAAAG GTTTACACAC AGTGTGGTCA CATTTAGAAG
  GGCACAAAGC GATCTGGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371173036	MGP_WTSI_7_52495215	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G	G	A	A	A	A	A	A	A	A	A	A	G	A	G	A	A	A	A	A	G	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265919535					SNP	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G	G	A	A	A	A	A	A	A	A	A	A	G	A	G	A	A	A	A	A	G	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371173036	MGP_WTSI_7_52495215	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44889269 () rs orientation: forward

Symbol	Name	Function Class
Cd37	CD37 antigen	730 bp upstream
Cpgi19038	CpG island 19038	725 bp proximal
Rr380753	regulatory region 380753	within coordinates
Slc6a16	solute carrier family 6, member 16	1240 bp upstream
Tssr66503	transcription start site region 66503	1229 bp upstream
Tssr66504	transcription start site region 66504	1264 bp upstream
Tssr72351	transcription start site region 72351	1089 bp upstream
Tssr72352	transcription start site region 72352	981 bp upstream
Tssr72353	transcription start site region 72353	779 bp upstream
Tssr72354	transcription start site region 72354	742 bp upstream
Tssr72355	transcription start site region 72355	712 bp upstream
Tssr72356	transcription start site region 72356	558 bp upstream
Tssr72357	transcription start site region 72357	550 bp upstream
Tssr72358	transcription start site region 72358	525 bp upstream
Tssr72359	transcription start site region 72359	495 bp upstream
Tssr72360	transcription start site region 72360	458 bp upstream
Tssr72361	transcription start site region 72361	435 bp upstream