rs265928137 SNP Detail

Summary

• ID
  rs265928137
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:76576112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGACTCT GAAAAGGTAT
  TCTTCTCCCT GAGTTAGGTT GGTAATAACT GCGTCAAGGG ACTTCACCCT AGCACACTCT
  GACCACTTAT CAGTGTTTTT AGCTTGCATT TCTACGATAT ACTGGATGAT TTTACTGCCA
  CCGTCATGTT CGGGCTTTGT CCAACTGAGA GAGACACTGT TTCTGGTGAC ATCATCCACA
  R
  TTATTTTCCC TGGAGGTTGT GGGACTTCTG CAACCTTGAT TGGATCTGCA GTGCGGGCAG
  GCAAGCCAAT ACCGTATTCG TTCTCAGCGG TAACCCTGAA GTAGTAACTG CAACCTTCTT
  GGAGCTGATC GATTTTCCAC GAATTCTTAT GGCAGTTTGT TACAACTGCA GCATAGGATT
  TTCTTGTGGC TTCTCGTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354531666	MGP_WTSI_2_76583825	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265928137					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354531666	MGP_WTSI_2_76583825	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76576112 () rs orientation: forward

Symbol	Name	Function Class
Gm13938	predicted gene 13938	within coordinates
Gm75564	predicted gene, 75564	within coordinates
Tssr542	transcription start site region 542	1376 bp downstream
Tssr24717	transcription start site region 24717	1988 bp upstream
Tssr24718	transcription start site region 24718	1944 bp upstream
Tssr24719	transcription start site region 24719	634 bp upstream
Tssr24720	transcription start site region 24720	170 bp upstream
Tssr24721	transcription start site region 24721	128 bp upstream
Tssr24722	transcription start site region 24722	314 bp downstream
Tssr24723	transcription start site region 24723	638 bp downstream
Tssr24724	transcription start site region 24724	1295 bp downstream
Ttn	titin	Coding-NonSynonymous