rs265930379 SNP Detail

Summary

• ID
  rs265930379
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:63431621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGAAGGTG GGGTACATCC
  CTGATGAGGA GCTTCAGGTT TCTTCCCTGG AGGCGCTGCA GGTGGGGGTT CACTTCGGGA
  TGGGTGATGG AGGCATCTCT ACTTGGGCTC CCCCTGCAAG TAGGAGGGAT GTTGCGGTCT
  CCTTCCCGGG GTGACCACTG GAGGCTCATC TCTCTGTCTC CCCACCCCTA CCATCGCCCC
  S
  TCCCTCTCCC CTCCTGAAAC CACCACCGTG ATTCAAGCTC TTTCTCTGGG AAATAACTCT
  GGGAGCACCT TCGCCTACCC TCCAGAGTCA CCATACCTCT GAGTTATCCC TCCCCATCTC
  AAGTCTCCCC GTTTCCTCTC CCAGGCTTGC CTGGGAAAGA GTGGACTGGT ACTGAGAATA
  GGCAAGCGCT CAGAATCCAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391308361	MGP_WTSI_14_63813009	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265930379					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391308361	MGP_WTSI_14_63813009	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:63431621 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6601	CpG island 6601	216 bp distal
Gm62940	predicted gene, 62940	within coordinates
Neil2	nei like 2 (E. coli)	316 bp upstream
Rr493637	regulatory region 493637	642 bp distal
Rr493638	regulatory region 493638	557 bp distal
Rr493639	regulatory region 493639	549 bp distal
Rr493640	regulatory region 493640	within coordinates
Rr493641	regulatory region 493641	853 bp proximal
Rr493642	regulatory region 493642	1524 bp proximal
Rr493643	regulatory region 493643	1787 bp proximal
Rr493644	regulatory region 493644	1879 bp proximal
Tssr129166	transcription start site region 129166	664 bp upstream