rs265934166 SNP Detail

Summary

• ID
  rs265934166
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:32903380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGCAGCA CAGGAGAAAT
  GCATGCTGGG AGCCCAGGGC CACCCCCAAT GCCTGCCTGT ACTTCCCACA CTTCCCAGCA
  TCTTGCTCAC TTCCCTCACT TCCTGCCCAG CCTTTTGGGG ACTAGAGAAG CTATAGGATG
  TGAAGGAAAT GAGCTCAGGG AGACCAAGTG CGGGGGCGGG GGGGGGGGGC GGGGGGGGTT
  S
  CCTGGGGGGG GCGCAGGAGA GCAAGACCAC CCAAGGGATT TCCCAGGCCC TAACTATGAA
  AGAGCCAACT ACATGTGCTA GAAGGCACTC CCACCCAGAC CTCCCAGCCT CAGGACAGGG
  AAGGAAAAGA GCCCTGAAAA GCTTGCCTGA TGCTCCAGGT CCCACTTGTG GCTTCTATCA
  GCTCAGTCAC TCCCGAGACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss364466299	MGP_WTSI_5_33088685	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs265934166					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364466299	MGP_WTSI_5_33088685	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:32903380 () rs orientation: forward

Symbol	Name	Function Class
Gm71279	predicted gene, 71279	448 bp upstream
Pisd	phosphatidylserine decarboxylase	within coordinates
Rr609420	regulatory region 609420	within coordinates
Rr609421	regulatory region 609421	266 bp proximal
Rr609422	regulatory region 609422	459 bp proximal
Rr609423	regulatory region 609423	1557 bp proximal
Rr609424	regulatory region 609424	1795 bp proximal
Tssr45794	transcription start site region 45794	83 bp upstream
Tssr45795	transcription start site region 45795	485 bp upstream
Tssr50589	transcription start site region 50589	236 bp downstream
Tssr50590	transcription start site region 50590	281 bp downstream
Tssr50591	transcription start site region 50591	307 bp downstream