rs265941079 SNP Detail

Summary

• ID
  rs265941079
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:66684306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTGTCAC ATCCTAGCTG
  TTTCTTGAGT CAGACTTCCC CTGGCAGGAA AACAGGCTGC CCACCCACCT AGCACAGCAC
  CTTGTCCTTT ATAGGCAGCT CCTCAGATCC TCTGAGCATT CACTGTGCTG AGGCAGTTCT
  TCACCAGAAC TTTTCCCTGC TCAATTTCAG GGGTCCTTTT CTAGCTCCCC AAAGCCCAGT
  M
  CTAACAGCTG TACCTCCAGA GGGCTCCTAA AGTCTCTCCT GTCCCTGTCC CAGCCACAGT
  TCTCTAAATA CCTTTAGACG CAGACCATGG CCTCTCCTGG GAGTTGGCAG TAGAGAGTCA
  ATGGGTACAG GGTCACCAGC TCTCCATCAG CTGCTGCTGC TCCAGGCTGA GTGGGTCACA
  CAGGCTCCGG AGGGAGCGCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394379532	MGP_WTSI_15_66644019	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265941079					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394379532	MGP_WTSI_15_66644019	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:66684306 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr369944	regulatory region 369944			1483 bp upstream
Rr503567	regulatory region 503567			1483 bp distal
Rr503568	regulatory region 503568			691 bp distal
Rr503569	regulatory region 503569			within coordinates
Rr503570	regulatory region 503570			126 bp proximal
Rr503571	regulatory region 503571			1627 bp proximal
Rr503572	regulatory region 503572			1673 bp proximal
Sla	src-like adaptor			Intron
				mRNA-UTR
Tg	thyroglobulin			Intron
				Noncoding-Transcript-Variant
Tssr131484	transcription start site region 131484			213 bp downstream
Tssr131485	transcription start site region 131485			79 bp downstream
Tssr134584	transcription start site region 134584			1830 bp upstream
Tssr134585	transcription start site region 134585			354 bp upstream
Tssr134586	transcription start site region 134586			322 bp upstream
Tssr134587	transcription start site region 134587			243 bp upstream
Tssr134588	transcription start site region 134588			180 bp downstream
Tssr134589	transcription start site region 134589			202 bp downstream
Tssr134590	transcription start site region 134590			228 bp downstream
Tssr134591	transcription start site region 134591			259 bp downstream
Tssr134592	transcription start site region 134592			740 bp downstream