rs265941122 SNP Detail

Summary

• ID
  rs265941122
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:103573739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCTGAGA CCCCCGAGTG
  GGAGGGAGCG ACGGGCTGTG GGCCACAGCG AGTGACGCTG CCCCGTGGAG CTGGTGCGGA
  CAGCCTTGCG CCGAGCGCGC GGTGGGAAGG GCTCCCGGAG TCTGTTTCTA ATTTCTGTAA
  ATGATTGTGG ACATGGTGTG GTTAGAAGCC GCCCAGAAGA ATGTGTCTGT GTAAGGGCTC
  S
  GAGAAGGGGG TAGGGACGGG GACAGGCTCT AGTAAAGTTT GCTTCTCTCT GCTGCAGGCC
  AGCCTTTCTT TTCTCCACTT TGCTCGATAA CGTGAGCGCC GAGAGCTGCA AAGTTAAAAG
  TTAAGCCAAA GTCAAGGAAC TTTGGAAATT TAATTTCCTT CTGTTGTGTA TTGGAGAAGC
  GAGGATGGGG AGACATGGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366098455	MGP_WTSI_5_103854892	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265941122					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366098455	MGP_WTSI_5_103854892	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:103573739 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16135	CpG island 16135	within coordinates
Ptpn13	protein tyrosine phosphatase, non-receptor type 13	within coordinates
Rr615857	regulatory region 615857	1647 bp distal
Rr615858	regulatory region 615858	362 bp distal
Rr615859	regulatory region 615859	within coordinates
Tssr47557	transcription start site region 47557	676 bp downstream
Tssr47558	transcription start site region 47558	642 bp downstream
Tssr47559	transcription start site region 47559	614 bp downstream
Tssr52160	transcription start site region 52160	144 bp upstream
Tssr52161	transcription start site region 52161	112 bp upstream