rs265944860 SNP Detail

Summary

• ID
  rs265944860
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:100144166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGCTGTG GCACGCACAT
  GAAGGTCAGA AGACAACTCA GGCCTCCTAC CATCTGTGTC CCAATGGCAA GCACCCTTAC
  CCACTGAGCC ATCTTGCTGG TCTGAGCTTC CATTCTTTTT TTTTTTTTTC TTTTGTCCTA
  GCTTTTGATG TCCCTGTGAA TGAGATTAGA AATTGGGTGT TGTTTTTTTA TTGCCTCCAG
  K
  GGTTGTCCGG TCCTATAAAG TGGATTCTGT TTTTGTTGGT TCATTTTGGG TCGGGATCTC
  AGGACCTCTC TTCGGCTGCC CTGGAGCTTT AGATGCAGAC CGTGCCTGAC AGGATTATCT
  TTCTAGGCCT GCGTTTTAGT CATAGAAACC TTTAGTACAG GTGATCTTTG CCTCTGGTCC
  CAACCCTCGA GGACCCGACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372520103	MGP_WTSI_7_107643468	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs265944860					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372520103	MGP_WTSI_7_107643468	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100144166 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19484	CpG island 19484	1249 bp distal
Gm72028	predicted gene, 72028	1710 bp upstream
Rr368386	regulatory region 368386	763 bp upstream
Rr400469	regulatory region 400469	1510 bp downstream
Rr652131	regulatory region 652131	1940 bp distal
Rr652133	regulatory region 652133	1612 bp distal
Tssr68123	transcription start site region 68123	1635 bp downstream
Tssr68124	transcription start site region 68124	1589 bp downstream
Tssr68125	transcription start site region 68125	1145 bp downstream
Tssr68126	transcription start site region 68126	1111 bp downstream
Tssr68127	transcription start site region 68127	1004 bp downstream
Tssr68128	transcription start site region 68128	871 bp downstream
Tssr68129	transcription start site region 68129	629 bp downstream
Tssr68130	transcription start site region 68130	63 bp downstream
Tssr68131	transcription start site region 68131	1028 bp upstream
Tssr68132	transcription start site region 68132	1768 bp upstream
Tssr68133	transcription start site region 68133	1912 bp upstream
Tssr73743	transcription start site region 73743	718 bp downstream
Ucp2	uncoupling protein 2 (mitochondrial, proton carrier)	within coordinates