rs265946599 SNP Detail

Summary

• ID
  rs265946599
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110366729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGCAGCAT ACTATTCATT
  AAAAGGAAAA TAATTTTCTG GGTTGATGGT ATGTGCCTTT AATCCCAGCA GTCTGGAGGC
  AGAAGGAGGG TCCATATAGC AAAATCCAGG TGAGCCAGGG CTGCATAGTG AGATCCTGTC
  GTATTTTTAA ATTATTGCTT CATTTTTATC ACATCTTTAA CATTTTAAGT GTGCTATGTA
  M
  TGTATATTAG CAGTCATGTG AGTATCATTG ATAAATATGT AGATTGCAAG CATCAGGCTA
  TGAAGTAGAA AGAATAAAAT TTGGTGCTTA AATGAGACAG CTGTGAAGTG AATGAAAACT
  CACAGTAGCA GTAACTCTGT GAAAGAGGCA CAAGTCAAAA GGTGGCTCCC CAGTGTGGCT
  TAAAGTGGGG GTGCTTGGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322398770	CHEV_7_117911036	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265946599					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110366729 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	684 bp upstream
B430319F04Rik	RIKEN cDNA B430319F04 gene	within coordinates
Cpgi19579	CpG island 19579	561 bp proximal
Rr653308	regulatory region 653308	271 bp proximal
Rr653309	regulatory region 653309	899 bp proximal
Rr653310	regulatory region 653310	1400 bp proximal
Tssr68503	transcription start site region 68503	541 bp upstream
Tssr68504	transcription start site region 68504	584 bp upstream
Tssr68505	transcription start site region 68505	616 bp upstream
Tssr68506	transcription start site region 68506	647 bp upstream
Tssr68507	transcription start site region 68507	1093 bp upstream
Tssr68508	transcription start site region 68508	1308 bp upstream
Tssr74265	transcription start site region 74265	1779 bp downstream