rs265956890 SNP Detail

Summary

• ID
  rs265956890
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:69195939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTCCTGT CTCTTTTTTT
  TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TGTGTGTGTG TGTGTGTGTG GTTGTATTTC
  AAAAAATTCT AAAGGAAAAA AAAAACCTAC TTGGGGATGA ATGTGTCTGA AATCAAACAT
  TTTTGTAAGG CCATAGCTTA ACTAAAAGAC AATGACGTTT TCTGACCATT CCAATCCTAG
  R
  ACTGTGTAAA TGTTTGGAAA ACATTTCTTT TTCCTTGAAA TGGGGGTTGG GAGGGGGAAT
  GAACAGATCT GAATCTTTGT TATGGGGCTA GATGTCTGCA TGTGTTCTAA ATTACCGCCA
  CAACACAGGG TCAAGGCTAG CTTGGTTCCA TGGAAAGAGA AATATTAGAA TCCTTCCTGT
  TTGATCATCA GAGGGTGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322997864	CHEV_9_69136464	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265956890					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:69195939 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21987	CpG island 21987	654 bp proximal
Rora	RAR-related orphan receptor alpha	Intron
Rr682144	regulatory region 682144	535 bp proximal
Rr682145	regulatory region 682145	1036 bp proximal
Tssr85839	transcription start site region 85839	253 bp downstream
Tssr85840	transcription start site region 85840	1184 bp upstream
Tssr85841	transcription start site region 85841	1208 bp upstream
Tssr85842	transcription start site region 85842	1245 bp upstream
Tssr85843	transcription start site region 85843	1252 bp upstream