rs265973928 SNP Detail

Summary

• ID
  rs265973928
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164720050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTC TCTGTGTAGC CCTGGCTGTC
  Y
  TGGAACTCAC TCTGTAGTCC AGGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320607035	CHEV_2_164703630	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265973928					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164720050 () rs orientation: forward

Symbol	Name	Function Class
4930445K14Rik	RIKEN cDNA 4930445K14 gene	157 bp downstream
Cpgi12676	CpG island 12676	601 bp proximal
Gm75548	predicted gene, 75548	1007 bp downstream
Pcif1	phosphorylated CTD interacting factor 1	1238 bp upstream
Rr397480	regulatory region 397480	1080 bp upstream
Rr397481	regulatory region 397481	1673 bp upstream
Rr569748	regulatory region 569748	216 bp distal
Rr569749	regulatory region 569749	468 bp proximal
Rr569750	regulatory region 569750	533 bp proximal
Rr569751	regulatory region 569751	737 bp proximal
Rr569752	regulatory region 569752	1238 bp proximal
Rr569753	regulatory region 569753	1252 bp proximal
Rr569754	regulatory region 569754	1659 bp proximal
Tssr21683	transcription start site region 21683	1228 bp upstream
Tssr21684	transcription start site region 21684	1886 bp upstream
Tssr21685	transcription start site region 21685	1915 bp upstream
Tssr27592	transcription start site region 27592	1605 bp downstream