rs265974637 SNP Detail

Summary

• ID
  rs265974637
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116387780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAACAGTG TATAGCAGGT
  TAGTAAAATG TTTTCTTTTT TGGTGTAGAG GGTAATGAGG CTTCCTGTGA CTTTAGACTT
  AACTCTCCAG GAAAACACCT TATGAACTTG TAATTATTAT TCTGGGACGG AGAAGGAAAA
  ATAAACGTAA AATAACAAAC TTCAAAGTTG AAAGCAAAGT TTTTTGTTTT GTTTTGTTTT
  K
  TTTTTTTCTT TTTTTTGTCT CTCAACAGAC ATTAATGTCA TAAGACATTT TGGTTGTAAG
  TGCAAAAGTA TTAGTGGCTC CTAATGTATA AAGAACAGGC AAATTACTAA TCTACAAGTC
  TAAACAAACA AACAAAAATT GTTTCTAAGT TTCTTCCCCA TGCATTCACA AGTGGTTATC
  GTTCAAAAAC AATAACTATA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss359356979	MGP_WTSI_3_116297049	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs265974637					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359356979	MGP_WTSI_3_116297049	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116387780 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13737	CpG island 13737	345 bp proximal
Rr397965	regulatory region 397965	632 bp upstream
Rr583746	regulatory region 583746	319 bp proximal
Rr583747	regulatory region 583747	616 bp proximal
Rr583748	regulatory region 583748	697 bp proximal
Rr583749	regulatory region 583749	890 bp proximal
Rr583750	regulatory region 583750	1058 bp proximal
Sass6	SAS-6 centriolar assembly protein	851 bp upstream
Trmt13	tRNA methyltransferase 13	within coordinates
Tssr31360	transcription start site region 31360	828 bp upstream
Tssr35316	transcription start site region 35316	685 bp downstream
Tssr35317	transcription start site region 35317	717 bp downstream