rs265994154 SNP Detail

Summary

• ID
  rs265994154
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:116900767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGTTAAG AGCACTGATG
  GCTCTTCCGA AGGTCCTGAG TTCAAATCCC AGCAACCATA GGTTGGCTCA CAACCACCTG
  TAATGAGATC TGATGCCCTC CTCTGGTGCG TCTGAAGAGT CAGCTACAGT GTACTTATGT
  ATAATAATAA ATAAATCTTT GGCTCAGAGC GAGCAGGAAC TGAGTGGAGT TGACCAGAGC
  R
  AGCTGAGGTC CTAAAAATTC TATTCCCAAG AAGGCTCGCA ACCATCTGTA CAGCTACAGT
  GTACTCACAT AAATAATCTT TTAAAAAAAG AGAGAAATGG TTAAAACATA CATAGTCTAG
  GGAAAAGCCC CAAAACTAAT GCAAAAAAAA AAAAAAAGTT TTCTCGGCGC TAGCGAGATG
  GCTCAGCGGT TAAGAGCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323494033	CHEV_10_116501918	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs265994154					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:116900767 () rs orientation: forward

Symbol	Name	Function Class
Cct2	chaperonin containing TCP1 subunit 2	1048 bp upstream
Cpgi2223	CpG island 2223	824 bp distal
Rr402250	regulatory region 402250	829 bp downstream
Rr439433	regulatory region 439433	558 bp distal
Rr439434	regulatory region 439434	288 bp distal
Rr439435	regulatory region 439435	90 bp distal
Rr439436	regulatory region 439436	262 bp proximal
Tssr99381	transcription start site region 99381	1804 bp upstream
Tssr99382	transcription start site region 99382	1496 bp upstream
Tssr99383	transcription start site region 99383	1110 bp upstream
Tssr99384	transcription start site region 99384	1060 bp upstream