rs266006402 SNP Detail

Summary

• ID
  rs266006402
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141267756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTAGATT TTTAAACAAT
  AATTTATTTC ATGTGCATTG GCATTTTGCC TGAATGTGTC TGTATGAGGG TGTCAGATCC
  CTTGGAACCA GAGGTATAGA CACTTGTGAA CTGCCATTTA GATGCTGGGA ACTGAACTCA
  GGACCTCTGG AAGAGCAGAC AGTGCTATTA ATTCCTGAGC ATGAGCCATC TCTCCAACCC
  C
  AAAACTATAT ATTTATATTT TTATTATTTT TTTTTTTTTA CAAAATATCC TCCTAGATTA
  GCCAGAGGGT TTGTTAATAG TAGTACTGTT GCCAGTCCTG GTGGCAAGGT CCTTAATCCT
  AACACTTAGG GGACAGAGGC AGGACTATCT CTGTGAGCTC TAGAACAGTC ATAGCTATAT
  AGAGACAACC CTGTCTTTAA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321387952	CHEV_4_141096360	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs266006402					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141267756 () rs orientation: forward

Symbol	Name	Function Class
B830004H01Rik	RIKEN cDNA B830004H01 gene	within coordinates
Cpgi15234	CpG island 15234	1360 bp distal
Gm68462	predicted gene, 68462	within coordinates
Rr603789	regulatory region 603789	1358 bp distal
Rr603790	regulatory region 603790	1312 bp proximal
Spen	spen family transcription repressor	1848 bp upstream
Tssr44321	transcription start site region 44321	1920 bp upstream
Tssr44322	transcription start site region 44322	1819 bp upstream