rs266012664 SNP Detail

Summary

• ID
  rs266012664
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:11175440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTCAGGG TAAAGAACTT
  CTAACTATTG AACTCTGTAG TTATAGGATA TCAGAATACC ACAGGCCTTC CAAACCCAGA
  GGTTCTAAAG CGATGGAAAC CAAATACTAA AATCAGTGCT GTAGGGATGA AGGTTGCATT
  CAATTATGTT TAAGAGGGAT ACTAAAGAGT ACTCAAGGTT TGAATTCTGA TTCTTTCTAA
  Y
  CACATAACAA TATAATGTAT AATAATGTAA TGCTGATTAT ATTACATAAT ATTTCAAAAC
  ATTATTATTT TCATGTGTCA AGTGGGGATG ATAATAATGG TTATGATGTT AGCTACTTCA
  TTAGATTATG AAGGTAGAAT GAACAATGTA TGTAATTCTT CCCACCACAG GCCTACTATG
  TATAAGTATT TACTATGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353088217	MGP_WTSI_2_11092256	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs266012664					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353088217	MGP_WTSI_2_11092256	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:11175440 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11198	CpG island 11198	1383 bp proximal
Gm74583	predicted gene, 74583	within coordinates
Prkcq	protein kinase C, theta	1482 bp upstream
Tssr402	transcription start site region 402	1511 bp upstream
Tssr403	transcription start site region 403	1753 bp upstream
Tssr16098	transcription start site region 16098	1252 bp upstream
Tssr16099	transcription start site region 16099	1404 bp upstream
Tssr16100	transcription start site region 16100	1425 bp upstream
Tssr16101	transcription start site region 16101	1451 bp upstream
Tssr16102	transcription start site region 16102	1532 bp upstream
Tssr16103	transcription start site region 16103	1553 bp upstream
Tssr16104	transcription start site region 16104	1587 bp upstream
Tssr16105	transcription start site region 16105	1659 bp upstream
Tssr16106	transcription start site region 16106	1680 bp upstream
Tssr16107	transcription start site region 16107	1700 bp upstream
Tssr16108	transcription start site region 16108	1727 bp upstream
Tssr16109	transcription start site region 16109	1759 bp upstream
Tssr22604	transcription start site region 22604	542 bp upstream