rs266016006 SNP Detail

Summary

• ID
  rs266016006
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:36007553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGAACTA GAGCCTAGAG
  TTCTTCAAAG GGCAGAGCTG GAGAAGCTAC CCAAGTCCTT TGGAGGAGTC TAAAATAACA
  TGTTTGGATC TCAAATAGTG GAACAAGAAG CTATGAAGTT GAAGTTACCT TGAAGTCCCC
  AAGATGTTAG AGGTGTCAGA GCTGTGGAAT ACTTGCTAAG AAAAGCTGCT AATAGAAAGT
  S
  GAACAAGCCC AAGAAAGAAT TGTGTTATAG TCAACAAAGC TAAAAGGAGC TGGGAATCAG
  ACATGGAGAT GCAGAATTTG GAGTTTGCCC AGCTGGTTTT CTGTCTTGCT TTGGTCCACA
  ATTTCCTCAT TATGCCATTT TGGAATAGTA ACATATATCC TATGCTATGA TATGTTGGAA
  GTGTGTGATC TGCTTTGAAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321084847	CHEV_4_35954586	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs266016006					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:36007553 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lingo2	leucine rich repeat and Ig domain containing 2			Intron
				Noncoding-Transcript-Variant
Tssr41223	transcription start site region 41223			1546 bp upstream